Evidence map›Paper›PMID 33815045›Full record

ArticleFrontiers in neuroscience2021

Network Analysis of the CSF Proteome Characterizes Convergent Pathways of Cellular Dysfunction in ALS.

Alexander G Thompson, Elizabeth Gray, Philip D Charles, Michele T M Hu, Kevin Talbot, Roman Fischer, Benedikt M Kessler, Martin R Turner

Open access · goldAbstract read
In one paragraph

Article in Frontiers in neuroscience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Alexander G ThompsonNuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom.
Elizabeth GrayNuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom.
Philip D CharlesTarget Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Michele T M HuNuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom.
Kevin TalbotNuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom.
Roman FischerTarget Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Benedikt M KesslerTarget Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Martin R TurnerNuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom.
University of Oxford · GB

Funding

Medical Research Council MR/T006927/1Motor Neurone Disease Association TURNER/OCT18/989-797
6 · The paper itself

Abstract

backgroundAmyotrophic lateral sclerosis is a clinical syndrome with complex biological determinants, but which in most cases is characterized by TDP-43 pathology. The identification in CSF of a protein signature of TDP-43 network dysfunction would have the potential to inform the identification of new biomarkers and therapeutic targets.

methodsWe compared CSF proteomic data from patients with ALS (

resultsWeighted correlation network analysis identified 10 modules, including those enriched for terms involved in gene expression including nucleic acid binding, RNA metabolism and translation; humoral immune system function, including complement pathways; membrane proteins, axonal outgrowth and adherence; and glutamatergic synapses. Immune system module eigenproteins were increased in ALS, whilst axonal module eigenproteins were decreased in ALS. The 19 altered protein correlations in ALS were enriched for gene expression (OR 3.05,

conclusionsAlterations in the co-correlation network in CSF samples identified a set of pathways known to be associated with TDP-43 dysfunction in the pathogenesis of ALS, with important implications for therapeutic targeting and biomarker development.

Indexed as

amyotrophic lateral sclerosisbiomarkercerebrospinal fluidmotor neuron diseasenetwork analysisproteomicsproteomics & bioinformaticsWGCNA

Identifiers

PMID33815045
PMCPMC8010303
OpenAlexW3136681568

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.