Evidence map›Paper›PMID 33811135›Full record

ArticleJournal of medical genetics2022

Characterisation of protein-truncating and missense variants in

Pei Sze Ng, Rick Acm Boonen, Eldarina Wijaya, Chan Eng Chong, Milan Sharma, Sabine Knaup, Shivaani Mariapun, Weang Kee Ho, Joanna Lim, Sook-Yee Yoon and 20 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medical genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. GermlineCancers · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 12 institutions in 5 countries.

Pei Sze NgCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.ORCID 0000-0001-5403-2065
Rick Acm BoonenDepartment of Human Genetics, Leiden University Medical Center, Leiden, Zuid-Holland, The Netherlands.
Eldarina WijayaCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Chan Eng ChongCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Milan SharmaDepartment of Human Genetics, Leiden University Medical Center, Leiden, Zuid-Holland, The Netherlands.
Sabine KnaupDepartment of Human Genetics, Leiden University Medical Center, Leiden, Zuid-Holland, The Netherlands.
Shivaani MariapunCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Weang Kee HoCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Joanna LimCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Sook-Yee YoonCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.ORCID 0000-0002-9992-0901
Nur Aishah Mohd TaibUniversity Malaya Cancer Research Institute, University of Malaya Medical Centre, Kuala Lumpur, Wilayah Persekutuan, Malaysia.
Mee Hoong SeeUniversity Malaya Cancer Research Institute, University of Malaya Medical Centre, Kuala Lumpur, Wilayah Persekutuan, Malaysia.
Jingmei LiHuman Genetics, Genome Institute of Singapore, Singapore.
Swee Ho LimBreast Department, KK Women's and Children's Hospital, Singapore.
Ern Yu TanDepartment of General Surgery, Tan Tock Seng Hospital, Singapore.
Benita Kiat-Tee TanDepartment of Breast Surgery, Singapore General Hospital, Singapore.
Su-Ming TanDivision of Breast Surgery, Changi General Hospital Department of General Surgery, Singapore.
Veronique Kiat-Mien TanSinghealth Duke-NUS Breast Centre, Singhealth, Singapore.
Rob Martinus van DamSaw Swee Hock School of Public Health, National University of Singapore, Singapore.
Kartini RahmatDepartment of Biomedical Imaging, Faculty of Medicine, University of Malaya Medical Centre, Kuala Lumpur, Wilayah Persekutuan, Malaysia.
Cheng Har YipSubang Jaya Medical Centre, Subang Jaya, Malaysia.
Sara CarvalhoCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care and Department of Oncology, University of Cambridge, Cambridge, UK.
Craig LuccariniCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care and Department of Oncology, University of Cambridge, Cambridge, UK.
Caroline BaynesCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care and Department of Oncology, University of Cambridge, Cambridge, UK.
Alison M DunningCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care and Department of Oncology, University of Cambridge, Cambridge, UK.
Antonis AntoniouCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care and Department of Oncology, University of Cambridge, Cambridge, UK.
Haico van AttikumDepartment of Human Genetics, Leiden University Medical Center, Leiden, Zuid-Holland, The Netherlands.
Douglas F EastonCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care and Department of Oncology, University of Cambridge, Cambridge, UK.
Mikael HartmanSaw Swee Hock School of Public Health, National University of Singapore, Singapore.
Soo Hwang TeoCancer Research Malaysia, Subang Jaya, Selangor, Malaysia soohwang.teo@cancerresearch.my.ORCID 0000-0002-0444-590X
University of Cambridge · GBCancer Research Malaysia · MYUniversity Malaya Medical Centre · MYLeiden University Medical Center · NLNational University of Singapore · SGSingHealth Duke-NUS Academic Medical Centre · SGChangi General Hospital · SGHarvard University · USSingapore General Hospital · SGSubang Jaya Medical Centre · MYTan Tock Seng Hospital · SGUniversity of Nottingham Malaysia Campus · MY

Funding

Cancer Research UK 20861Wellcome TrustWellcome Trust 203477/Z/16/Z
6 · The paper itself

Abstract

backgroundRare protein-truncating variants (PTVs) in partner and localiser of BRCA2 (

methodsMutation testing was performed on germline DNA (n=15 768) using targeted sequencing panels. The functional impact of missense variants was tested in mouse embryonic stem cell based functional assays.

resultsPTVs in

conclusionDespite genetic and lifestyle differences between Asian and other populations, the population prevalence of

Indexed as

Breast NeoplasmsGenetic Predisposition to DiseaseAnimalsFanconi Anemia Complementation Group N ProteinFemaleGerm-Line MutationHumansMalaysiaMiceSingaporeFanconi Anemia Complementation Group N ProteinPALB2 protein, humanPalb2 protein, mousegenetic predisposition to diseasegerm-line mutation

Identifiers

PMID33811135
PMCPMC9046754
OpenAlexW3146595673

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.