Evidence map›Paper›PMID 33810787›Full record

ArticleBMC medical research methodology2021

Facilitating harmonized data quality assessments. A data quality framework for observational health research data collections with software implementations in R.

Carsten Oliver Schmidt, Stephan Struckmann, Cornelia Enzenbach, Achim Reineke, Jürgen Stausberg, Stefan Damerow, Marianne Huebner, Börge Schmidt, Willi Sauerbrei, Adrian Richter

Abstract read
In one paragraph

Article in BMC medical research methodology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Carsten Oliver SchmidtInstitute for Community Medicine, Department SHIP-KEF, University Medicine Greifswald, Greifswald, Germany. carsten.schmidt@uni-greifswald.de.
Stephan StruckmannInstitute for Community Medicine, Department SHIP-KEF, University Medicine Greifswald, Greifswald, Germany.
Cornelia EnzenbachInstitute for Medical Informatics, Statistics, and Epidemiology, University of Leipzig, Leipzig, Germany.
Achim ReinekeLeibniz Institute for Prevention Research and Epidemiology - BIPS, Bremen, Germany.
Jürgen StausbergInstitute for Medical Informatics, Biometry and Epidemiology (IMIBE), Faculty of Medicine, University of Duisburg-Essen, Duisburg, Germany.
Stefan DamerowRobert Koch Institute, Department of Epidemiology and Health Monitoring, Berlin, Germany.
Marianne HuebnerDepartment of Statistics and Probability, Michigan State University, East Lansing, MI, USA.
Börge SchmidtInstitute for Medical Informatics, Biometry and Epidemiology (IMIBE), Faculty of Medicine, University of Duisburg-Essen, Duisburg, Germany.
Willi SauerbreiInstitute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.
Adrian RichterInstitute for Community Medicine, Department SHIP-KEF, University Medicine Greifswald, Greifswald, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNo standards exist for the handling and reporting of data quality in health research. This work introduces a data quality framework for observational health research data collections with supporting software implementations to facilitate harmonized data quality assessments.

methodsDevelopments were guided by the evaluation of an existing data quality framework and literature reviews. Functions for the computation of data quality indicators were written in R. The concept and implementations are illustrated based on data from the population-based Study of Health in Pomerania (SHIP).

resultsThe data quality framework comprises 34 data quality indicators. These target four aspects of data quality: compliance with pre-specified structural and technical requirements (integrity); presence of data values (completeness); inadmissible or uncertain data values and contradictions (consistency); unexpected distributions and associations (accuracy). R functions calculate data quality metrics based on the provided study data and metadata and R Markdown reports are generated. Guidance on the concept and tools is available through a dedicated website.

conclusionsThe presented data quality framework is the first of its kind for observational health research data collections that links a formal concept to implementations in R. The framework and tools facilitate harmonized data quality assessments in pursue of transparent and reproducible research. Application scenarios comprise data quality monitoring while a study is carried out as well as performing an initial data analysis before starting substantive scientific analyses but the developments are also of relevance beyond research.

Indexed as

Data AccuracySoftwareHumansData qualityData quality indicatorsData quality monitoringInitial data analysisObservational health studiesR

Identifiers

PMID33810787
PMCPMC8019177

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.