ArticlePlants (Basel, Switzerland)2021
Genome-Wide Association Study Reveals Marker-Trait Associations for Early Vegetative Stage Salinity Tolerance in Rice.
Article in Plants (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 27 citations in OpenAlex.
- Flooding stress resilience and crop improvement.Plant cell reports · 2026Review
- GWAS and Regularised Regression Identify SNPs Associated with Candidate Genes for Stage-Specific Salinity Tolerance in Rice.Plants (Basel, Switzerland) · 2026Article
- Genome-wide association analysis to identify QTLs and candidate genes associated with grain yield and its related traits under low light conditions in rice (Oryza sativa L.).The plant genome · 2026Article
- Multi-locus genome-wide association studies reveal genomic regions associated with sodicity tolerance in rice.Plant molecular biology · 2025Article
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- Genome-wide association studies in rice germplasm reveal significant genomic regions for root and yield-related traits under aerobic and irrigated conditions.Frontiers in plant science · 2023Article
- Genetic Variability, Character Association, and Path Coefficient Analysis in Transplant Aman Rice Genotypes.Plants (Basel, Switzerland) · 2022Article
- A Review of Integrative Omic Approaches for Understanding Rice Salt Response Mechanisms.Plants (Basel, Switzerland) · 2022Review
- Integrated Multi-Omics Perspective to Strengthen the Understanding of Salt Tolerance in Rice.International journal of molecular sciences · 2022Review
- Identification of a Negative Regulator for Salt Tolerance at Seedling Stage via a Genome-Wide Association Study of Thai Rice Populations.International journal of molecular sciences · 2022Article
- Molecular tools, potential frontiers for enhancing salinity tolerance in rice: A critical review and future prospective.Frontiers in plant science · 2022Review
- Gene Mapping, Cloning and Association Analysis for Salt Tolerance in Rice.International journal of molecular sciences · 2021Review
Corrections and comments
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rice germplasm is a rich resource for discovering genes associated with salt tolerance. In the current study, a set of 96 accessions were evaluated for seedling stage salinity tolerance and its component traits. Significant phenotypic variation was observed among the genotypes for all the measured traits and eleven accessions with high level of salt tolerance at seedling stage were identified. The germplasm set comprised of three sub-populations and genome-wide association study (GWAS) identified a total of 23 marker-trait associations (MTAs) for traits studied. These MTAs were located on rice chromosomes 1, 2, 5, 6, 7, 9, and 12 and explained the trait phenotypic variances ranging from 13.98 to 29.88 %. Twenty-one MTAs identified in this study were located either in or near the previously reported quantitative trait loci (QTLs), while two MTAs namely, qSDW2.1 and qSNC5 were novel. A total of 18 and 13 putative annotated candidate genes were identified in a genomic region spanning ~200 kb around the MTAs
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