Evidence map›Paper›PMID 33809423›Full record

ArticleMicroorganisms2021

Complete Whole Genome Sequences of

Dustin A Therrien, Kranti Konganti, Jason J Gill, Brian W Davis, Andrew E Hillhouse, Jordyn Michalik, H Russell Cross, Gary C Smith, Thomas M Taylor, Penny K Riggs

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Origin and development of twoMicrobial genomics · 2025
    Article
  3. DNA Sequencing and the Third-Generation Sequencing Revolution.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Dustin A TherrienDepartment of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA.
Kranti KongantiTexas A&M Institute for Genome Sciences and Society, MS 2470, College Station, TX 77843-2470, USA.
Jason J GillDepartment of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA.ORCID 0000-0002-9494-6053
Brian W DavisDepartment of Veterinary Integrated Biosciences, Texas A&M University, College Station, TX 77843-4461, USA.ORCID 0000-0002-6121-135X
Andrew E HillhouseTexas A&M Institute for Genome Sciences and Society, MS 2470, College Station, TX 77843-2470, USA.ORCID 0000-0003-4874-7077
Jordyn MichalikDepartment of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA.
H Russell CrossDepartment of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA.
Gary C SmithDepartment of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA.
Thomas M TaylorDepartment of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA.ORCID 0000-0003-4191-5285
Penny K RiggsDepartment of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA.ORCID 0000-0003-3296-320X
Texas A&M University · US

Funding

U.S. Department of Agriculture AFRI 2012-68003-30155
6 · The paper itself

Abstract

In 2013, the U.S. Department of Agriculture Food Safety and Inspection Service (USDA-FSIS) began transitioning to whole genome sequencing (WGS) for foodborne disease outbreak- and recall-associated isolate identification of select bacterial species. While WGS offers greater precision, certain hurdles must be overcome before widespread application within the food industry is plausible. Challenges include diversity of sequencing platform outputs and lack of standardized bioinformatics workflows for data analyses. We sequenced DNA from USDA-FSIS approved, non-pathogenic

Indexed as

bacterial surrogateclosed genomeEscherichia colihigh throughput sequencinglong readsshort readswhole genome sequence

Identifiers

PMID33809423
PMCPMC8001026
OpenAlexW3136476353

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.