Evidence map›Paper›PMID 33809237›Full record

ArticleInternational journal of molecular sciences2021

Investigation of PRDM10 and PRDM13 Expression in Developing Mouse Embryos by an Optimized PACT-Based Embryo Clearing Method.

Jiwon Woo, Byung-Ho Jin, Mirae Lee, Eunice Yoojin Lee, Hyung-Seok Moon, Jeong-Yoon Park, Yong-Eun Cho

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jiwon WooDepartment of Neurosurgery, The Spine and Spinal Cord Institute, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul 06273, Korea.ORCID 0000-0001-9532-7740
Byung-Ho JinDepartment of Neurosurgery, The Spine and Spinal Cord Institute, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul 06273, Korea.
Mirae LeeDepartment of Neurosurgery, The Spine and Spinal Cord Institute, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul 06273, Korea.ORCID 0000-0003-0505-0990
Eunice Yoojin LeeCollege of Physicians and Surgeons, Columbia University Vagelos, New York, NY 10032, USA.
Hyung-Seok MoonBiomedical Research Center, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul 06230, Korea.
Jeong-Yoon ParkDepartment of Neurosurgery, The Spine and Spinal Cord Institute, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul 06273, Korea.
Yong-Eun ChoDepartment of Neurosurgery, The Spine and Spinal Cord Institute, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul 06273, Korea.
Yonsei University · KRColumbia University · US

Funding

National Research Foundation of Korea NRF-2017R1D1A1B03030315National Research Foundation of Korea NRF-2020R1A6A3A01097969National Research Foundation of Korea NRF-2020R1F1A1072307
6 · The paper itself

Abstract

Recent developments in tissue clearing methods have significantly advanced the three-dimensional analysis of biological structures in whole, intact tissue, providing a greater understanding of spatial relationships and biological circuits. Nonetheless, studies have reported issues with maintaining structural integrity and preventing tissue disintegration, limiting the wide application of these techniques to fragile tissues such as developing embryos. Here, we present an optimized passive tissue clearing technique (PACT)-based embryo clearing method, initial embedding PACT (IMPACT)-Basic, that improves tissue rigidity without compromising optical transparency. We also present IMPACT-Advance, which is specifically optimized for thin slices of mouse embryos past E13.5. We demonstrate proof-of-concept by investigating the expression of two relatively understudied PR domain (PRDM) proteins, PRDM10 and PRDM13, in intact cleared mouse embryos at various stages of development. We observed strong PRDM10 and PRDM13 expression in the developing nervous system and skeletal cartilage, suggesting a functional role for these proteins in these tissues throughout embryogenesis.

Indexed as

AnimalsEmbryo, MammalianEmbryonic DevelopmentGene Expression Regulation, DevelopmentalHistone-Lysine N-MethyltransferaseImaging, Three-DimensionalMiceTranscription FactorsHistone-Lysine N-MethyltransferasePrdm13 protein, mouseTranscription FactorsTristanin protein, mouseembryo clearingIMPACTpassive clearing techniquePRDM10PRDM13transparent embryo

Identifiers

PMID33809237
PMCPMC8000312
OpenAlexW3137330574

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.