Evidence map›Paper›PMID 33807714›Full record

ArticleInternational journal of environmental research and public health2021

Multi-Drug Featurization and Deep Learning Improve Patient-Specific Predictions of Adverse Events.

Ioannis N Anastopoulos, Chloe K Herczeg, Kasey N Davis, Atray C Dixit

Erratum issuedAbstract read
In one paragraph

Article in International journal of environmental research and public health, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Ioannis N AnastopoulosBiomolecular Engineering, University of California, Santa Cruz, CA 95064, USA.
Chloe K HerczegCoral Genomics, Inc., 953 Indiana St., San Francisco, CA 94107, USA.
Kasey N DavisCoral Genomics, Inc., 953 Indiana St., San Francisco, CA 94107, USA.
Atray C DixitCoral Genomics, Inc., 953 Indiana St., San Francisco, CA 94107, USA.ORCID 0000-0002-5065-6492

Funding

In Vitro Toxicity Testing at Massive Scale in Diverse Primary Human CellsR44ES032515 · NIEHS · GORDIAN BIOTECHNOLOGY, INC. · PI BORCH JENSEN, MARTIN · 2021 to 2023
$1.6M
Medical Research Council MC_PC_17228Medical Research Council MC_QA137853NIEHS NIH HHS R44 ES032515
6 · The paper itself

Abstract

While the clinical approval process is able to filter out medications whose utility does not offset their adverse drug reaction profile in humans, it is not well suited to characterizing lower frequency issues and idiosyncratic multi-drug interactions that can happen in real world diverse patient populations. With a growing abundance of real-world evidence databases containing hundreds of thousands of patient records, it is now feasible to build machine learning models that incorporate individual patient information to provide personalized adverse event predictions. In this study, we build models that integrate patient specific demographic, clinical, and genetic features (when available) with drug structure to predict adverse drug reactions. We develop an extensible graph convolutional approach to be able to integrate molecular effects from the variable number of medications a typical patient may be taking. Our model outperforms standard machine learning methods at the tasks of predicting hospitalization and death in the UK Biobank dataset yielding an R

Indexed as

Deep LearningDrug-Related Side Effects and Adverse ReactionsPharmaceutical PreparationsDatabases, FactualHumansMachine LearningPharmaceutical Preparationsadverse eventsFDA FAERSgraph convolutionneural networksreal world evidenceUK Biobank

Identifiers

PMID33807714
PMCPMC7967515

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.