Evidence map›Paper›PMID 33807540›Full record

ArticleMicroorganisms2021

Molecular Characterization of Coxsackievirus A24v from Feces and Conjunctiva Reveals Epidemiological Links.

Magilé C Fonseca, Mario Pupo-Meriño, Luis A García-González, Mayra Muné, Sonia Resik, Heléne Norder, Luis Sarmiento

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Magilé C FonsecaVirology Department, Center for Research Diagnosis, and Reference, Institute of Tropical Medicine "Pedro Kourí", Havana 11400, Cuba.
Mario Pupo-MeriñoDepartamento de Bioinformática, Universidad de las Ciencias Informáticas (UCI), Habana 19370, Cuba.ORCID 0000-0001-9130-0620
Luis A García-GonzálezCentro de Estudios de Matemática Computacional, Universidad de las Ciencias Informáticas (UCI), Habana 19370, Cuba.ORCID 0000-0003-4021-3345
Mayra MunéVirology Department, Center for Research Diagnosis, and Reference, Institute of Tropical Medicine "Pedro Kourí", Havana 11400, Cuba.
Sonia ResikVirology Department, Center for Research Diagnosis, and Reference, Institute of Tropical Medicine "Pedro Kourí", Havana 11400, Cuba.ORCID 0000-0001-7318-7206
Heléne NorderDepartment of Infectious Diseases/Virology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, 40530 Gothenburg, Sweden.ORCID 0000-0002-7528-3872
Luis SarmientoImmunovirology Unit, Department of Clinical Sciences, Skåne University Hospital, Lund University, 22185 Malmo, Sweden.ORCID 0000-0002-3694-1211
Instituto de Medicina Tropical “Pedro Kourí” · CUUniversity of Information Science · CULund University · SESahlgrenska University Hospital · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coxsackievirus A24 variant (CVA24v), the main causative agent of acute hemorrhagic conjunctivitis (AHC), can be isolated from both the eyes and lower alimentary tract. However, the molecular features of CVA24v in feces is not well-documented. In this study, we compared the VP1 and 3C sequences of CVA24v strains isolated from feces during AHC epidemics in Cuba in 1997, 2003, and 2008-2009 with those obtained from conjunctival swabs during the same epidemic period. The sequence analyses of the 3C and VP1 region of stool isolates from the three epidemics showed a high degree of nucleotide identity (ranging from 97.3-100%) to the corresponding conjunctival isolates. The phylogenetic analysis showed that fecal CVA24v isolates from the 1997 and 2003 Cuban outbreaks formed a clade with CVA24v strains isolated from conjunctival swabs in Cuba and other countries during the same period. There were three amino acid changes (3C region) and one amino acid change (VP1 region) in seven CVA24v strains isolated sequentially over 20 days from fecal samples of one patient, suggesting viral replication in the intestine. Despite these substitutions, the virus from the conjunctival swab and fecal samples were genetically very similar. Therefore, fecal samples should be considered as a reliable alternative sample type for the routine molecular diagnosis and molecular epidemiology of CVA24v, also during outbreaks of AHC.

Indexed as

acute hemorrhagic conjunctivitisconjunctival swabscoxsackievirus A24venterovirusfeces

Identifiers

PMID33807540
PMCPMC7998715
OpenAlexW3135029290

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.