Evidence map›Paper›PMID 33807423›Full record

ArticleCancers2021

Deletions on Chromosome Y and Downregulation of the

Małgorzata Łysiak, Anja Smits, Kenney Roy Roodakker, Elisabeth Sandberg, Anna Dimberg, Munila Mudaisi, Charlotte Bratthäll, Michael Strandeus, Peter Milos, Martin Hallbeck and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
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  10. Crosstalk betweenInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Małgorzata ŁysiakDepartment of Biomedical and Clinical Sciences, Linköping University, 58185 Linköping, Sweden.ORCID 0000-0002-0244-759X
Anja SmitsDepartment of Neuroscience and Physiology, Clinical Neuroscience, Sahlgrenska Academy, University of Gothenburg, 41345 Gothenburg, Sweden.ORCID 0000-0003-4171-2672
Kenney Roy RoodakkerDepartment of Neuroscience, Neurology, Uppsala University, University Hospital, 75185 Uppsala, Sweden.
Elisabeth SandbergDepartment of Neuroscience, Neurology, Uppsala University, University Hospital, 75185 Uppsala, Sweden.ORCID 0000-0002-9230-4751
Anna DimbergInstitute of Immunology, Genetics and Pathology, Uppsala University, 75185 Uppsala, Sweden.
Munila MudaisiDepartment of Biomedical and Clinical Sciences, Linköping University, 58185 Linköping, Sweden.
Charlotte BratthällDepartment of Oncology, District Hospital, 39185 Kalmar, Sweden.
Michael StrandeusDepartment of Oncology, Ryhov Hospital, 55185 Jönköping, Sweden.
Peter MilosDepartment of Biomedical and Clinical Sciences, Linköping University, 58185 Linköping, Sweden.
Martin HallbeckDepartment of Biomedical and Clinical Sciences, Linköping University, 58185 Linköping, Sweden.
Peter SöderkvistDepartment of Biomedical and Clinical Sciences, Linköping University, 58185 Linköping, Sweden.
Annika MalmströmDepartment of Biomedical and Clinical Sciences, Linköping University, 58185 Linköping, Sweden.ORCID 0000-0001-8410-4939
Linköping University · SEUppsala University Hospital · SELandstinget i Kalmar län · SERyhov Hospital Jönköping · SEUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBiological causes of sex disparity seen in the prevalence of cancer, including glioblastoma (GBM), remain poorly understood. One of the considered aspects is the involvement of the sex chromosomes, especially loss of chromosome Y (LOY).

methodsTumors from 105 isocitrate dehydrogenase (IDH) wild type male GBM patients were tested with droplet digital PCR for copy number changes of ten genes on chromosome Y. Decreased gene expression, a proxy of gene loss, was then analyzed in 225 IDH wild type GBM derived from TCGA and overall survival in both cohorts was tested with Kaplan-Meier log-rank analysis and maximally selected rank statistics for cut-off determination.

resultsLOY was associated with significantly shorter overall survival (7 vs. 14.6 months,

conclusionOur data show that deletions and reduced gene expression of chromosome Y genes, especially SRY, are associated with reduced survival of male GBM patients and connected to major susceptibility pathways of gliomagenesis.

Indexed as

glioblastomaLOYsex biasSRYsurvivalY chromosome

Identifiers

PMID33807423
PMCPMC8036637
OpenAlexW3148424367

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.