Evidence map›Paper›PMID 33807382›Full record

ArticleViruses2021

HIV-1 Subtype C Drug Resistance Mutations in Heavily Treated Patients Failing Integrase Strand Transfer Inhibitor-Based Regimens in Botswana.

Kaelo K Seatla, Dorcas Maruapula, Wonderful T Choga, Tshenolo Ntsipe, Nametso Mathiba, Mompati Mogwele, Max Kapanda, Bornapate Nkomo, Dinah Ramaabya, Joseph Makhema and 6 more

Abstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Limited HIV-1 Subtype CPathogens (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Kaelo K SeatlaBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.ORCID 0000-0002-2190-2842
Dorcas MaruapulaBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.
Wonderful T ChogaBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.ORCID 0000-0001-7606-0569
Tshenolo NtsipeNational Health Laboratory, Ministry of Health & Wellness, Gaborone 0000, Botswana.
Nametso MathibaBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.
Mompati MogweleBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.
Max KapandaBotswana Ministry of Health and Wellness, Gaborone 0000, Botswana.
Bornapate NkomoBotswana Ministry of Health and Wellness, Gaborone 0000, Botswana.
Dinah RamaabyaBotswana Ministry of Health and Wellness, Gaborone 0000, Botswana.
Joseph MakhemaBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.
Mompati MmalaneBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.
Madisa MineNational Health Laboratory, Ministry of Health & Wellness, Gaborone 0000, Botswana.
Ishmael KasvosveSchool of Allied Health Professions, Faculty of Health Sciences, University of Botswana, Gaborone 0000, Botswana.ORCID 0000-0002-2046-545X
Shahin LockmanBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.
Sikhulile MoyoBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.ORCID 0000-0003-3821-4592
Simani GaseitsiweBotswana Harvard AIDS Institute Partnership, Gaborone 0000, Botswana.

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RAJESH T GANDHI · 2004 to 2026
$94.4M
Partnership for Global Health Research Training Program (Renewal)-Supplement for OBSSR, NCI, NCI-AIDS and NIDCDD43TW010543 · FIC · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Wafaie W Fawzi, DAVIDSON HOWES HAMER · 2017 to 2026
$12.1M
Training in HIV Genomics, Treatment, and Cure Research in BotswanaD43TW009610 · FIC · THE BOTSWANA HARVARD HEALTH PARTNERSHIP · PI SHAHIN LOCKMAN, Joseph Moeketsi Makhema · 2013 to 2026
$4.4M
Mentoring in Patient-Oriented HIV Research in the Era of Universal ARTK24AI131928 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAHIN LOCKMAN · 2017 to 2026
$1.9M
FIC NIH HHS D43 TW009610FIC NIH HHS D43 TW010543NIAID NIH HHS K24 AI131928NIAID NIH HHS P30 AI060354Wellcome Trust 107752/Z/15/Z
6 · The paper itself

Abstract

There are limited real-world mutational and virological outcomes data of treatment-experienced persons diagnosed with HIV-1 subtype C (HIV-1 C) who are failing Integrase Strand Transfer Inhibitor-based regimens. Requisition forms sent for HIV-1 genotypic resistance testing (GRT) between May 2015 and September 2019 were reviewed and participants experiencing virologic failure while on dolutegravir (DTG) or raltegravir (RAL) cART at sampling recruited. Sanger sequencing of the HIV-1 Pol gene was performed from residual plasma samples and drug resistance mutational (DRM) analysis performed using the Stanford University HIV drug resistance database. 40 HIV-1C integrase sequences were generated from 34 individuals, 24 of whom were on DTG cART, three on RAL cART and seven on an unknown (DTG or RAL)-anchored cART at time of GRT. 11/34 (32%) individuals had DRMs to DTG and other integrase inhibitors. 7/11 (64%) patients had exposure to a RAL-based cART at the time of sampling. Out of the 11 individuals with DRMs, one (9%) had 2-class, 6 (55%) had 3-class, and 4 (36%) had 4-class multidrug-resistant HIV-1C. 7/11 individuals (64%) are currently virologically suppressed. Of the four individuals not virologically suppressed, three had extensive DRMs involving 4-classes of ARV drugs and one individual has demised. Resistance to DTG occurs more often in patients exposed to RAL cART. Individuals with 4-class DRMs plus integrase T97 and E157Q mutations appear to have worse outcomes. There is a need for frequent VL monitoring and GRT amongst treatment-experienced HIV-1C diagnosed individuals.

Indexed as

MutationAdultAnti-HIV AgentsBotswanaDatabases, Nucleic AcidDrug Resistance, ViralFemaleGenotypeHIV-1HIV InfectionsHIV Integrase InhibitorsHumansMaleMiddle AgedTreatment FailureViral LoadAnti-HIV AgentsHIV Integrase InhibitorsBotswanadolutegravirHIV-1Cintegrase inhibitorsmutationsresistance

Identifiers

PMID33807382
PMCPMC8066386

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.