Evidence map›Paper›PMID 33806447›Full record

ArticleCancers2021

Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer.

Martina K Zowada, Stephan M Tirier, Sebastian M Dieter, Teresa G Krieger, Ava Oberlack, Robert Lorenz Chua, Mario Huerta, Foo Wei Ten, Karin Laaber, Jeongbin Park and 12 more

Abstract read
In one paragraph

Article in Cancers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Martina K ZowadaTranslational Functional Cancer Genomics, National Center for Tumor Diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ) Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0002-4231-1021
Stephan M TirierDivision of Theoretical Bioinformatics, DKFZ Heidelberg, 69120 Heidelberg, Germany.
Sebastian M DieterTranslational Functional Cancer Genomics, National Center for Tumor Diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ) Heidelberg, 69120 Heidelberg, Germany.
Teresa G KriegerDivision of Theoretical Bioinformatics, DKFZ Heidelberg, 69120 Heidelberg, Germany.
Ava OberlackTranslational Functional Cancer Genomics, National Center for Tumor Diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ) Heidelberg, 69120 Heidelberg, Germany.
Robert Lorenz ChuaDivision of Theoretical Bioinformatics, DKFZ Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0001-5945-9957
Mario HuertaTranslational Functional Cancer Genomics, National Center for Tumor Diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ) Heidelberg, 69120 Heidelberg, Germany.
Foo Wei TenDivision of Theoretical Bioinformatics, DKFZ Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0003-0839-6815
Karin LaaberTranslational Functional Cancer Genomics, National Center for Tumor Diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ) Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0003-3666-2658
Jeongbin ParkDivision of Theoretical Bioinformatics, DKFZ Heidelberg, 69120 Heidelberg, Germany.
Katharina JechowDivision of Theoretical Bioinformatics, DKFZ Heidelberg, 69120 Heidelberg, Germany.
Torsten MüllerDivision of Proteomics of Stem Cells and Cancer, DKFZ Heidelberg, 69120 Heidelberg, Germany.
Mathias KalxdorfDivision of Proteomics of Stem Cells and Cancer, DKFZ Heidelberg, 69120 Heidelberg, Germany.
Mark KriegsmannInstitute of Pathology, Heidelberg University Hospital, 69120 Heidelberg, Germany.ORCID 0000-0002-7319-3646
Katharina KriegsmannDepartment of Hematology, Oncology and Rheumatology, Heidelberg University Hospital, 69120 Heidelberg, Germany.
Friederike HerbstTranslational Functional Cancer Genomics, National Center for Tumor Diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ) Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0002-2167-750X
Jeroen KrijgsveldDivision of Proteomics of Stem Cells and Cancer, DKFZ Heidelberg, 69120 Heidelberg, Germany.
Martin SchneiderDepartment of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, 69120 Heidelberg, Germany.
Roland EilsDivision of Theoretical Bioinformatics, DKFZ Heidelberg, 69120 Heidelberg, Germany.
Hanno GlimmTranslational Functional Cancer Genomics, National Center for Tumor Diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ) Heidelberg, 69120 Heidelberg, Germany.
Christian ConradDivision of Theoretical Bioinformatics, DKFZ Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0001-7036-342X
Claudia R BallTranslational Functional Cancer Genomics, National Center for Tumor Diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ) Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0002-1749-3791

Funding

BMBF-funded Heidelberg Center for Human Bioinformatics (HD-HuB) within the German Network for Bioinformatics Infrastructure (de.NBI) #031A537A, #031A537CDeutsche Krebshilfe Priority program 'Translational Oncology' Colon-Resist-NetDKFZ-HIPO HIPO-H012EU Framework Program Horizon 2020 TRANSCAN-2 ERA-NET, TACTIC consortiumHeidelberg School of Oncology DKTK postdoctoral fellowshipHelmholtz Association iMed ProgramHelmholtz Association Incubator grant sparse2big; grant #ZT-I-0007Helmholtz International Graduate School for Cancer Research (DKFZ, Heidelberg) PhD program stipendNCT 3.0 Precision Oncology Program NCT3.0_2015.4 TransOnco; NCT3.0_2015.54 DysregPTNCT Dresden Translational Research Grants in Precision Oncology, TIC specific regulatory programs in GI cancers
6 · The paper itself

Abstract

Intra-tumor heterogeneity of tumor-initiating cell (TIC) activity drives colorectal cancer (CRC) progression and therapy resistance. Here, we used single-cell RNA-sequencing of patient-derived CRC models to decipher distinct cell subpopulations based on their transcriptional profiles. Cell type-specific expression modules of stem-like, transit amplifying-like, and differentiated CRC cells resemble differentiation states of normal intestinal epithelial cells. Strikingly, identified subpopulations differ in proliferative activity and metabolic state. In summary, we here show at single-cell resolution that transcriptional heterogeneity identifies functional states during TIC differentiation. Furthermore, identified expression signatures are linked to patient prognosis. Targeting transcriptional states associated to cancer cell differentiation might unravel novel vulnerabilities in human CRC.

Indexed as

colorectal cancerpatient-derived cancer modelssingle-cell RNA-sequencingtranscriptional programstumor cell differentiationtumor heterogeneitytumor-initiating cellstumor metabolism

Identifiers

PMID33806447
PMCPMC7961698

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.