Evidence map›Paper›PMID 33803005›Full record

ArticleVaccines2021

HLA-DRB1 Alleles Associated with Lower Leishmaniasis Susceptibility Share Common Amino Acid Polymorphisms and Epitope Binding Repertoires.

Nicky de Vrij, Pieter Meysman, Sofie Gielis, Wim Adriaensen, Kris Laukens, Bart Cuypers

Open access · goldAbstract read
In one paragraph

Article in Vaccines, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  6. Immunoinformatic Analysis ofRecent advances in inflammation & allergy drug discovery · 2024
    Article
  7. Immune response to viscerotropicFrontiers in immunology · 2024
    Review
  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nicky de VrijDepartment of Computer Science, University of Antwerp, 2020 Antwerp, Belgium.
Pieter MeysmanDepartment of Computer Science, University of Antwerp, 2020 Antwerp, Belgium.ORCID 0000-0001-5903-633X
Sofie GielisDepartment of Computer Science, University of Antwerp, 2020 Antwerp, Belgium.
Wim AdriaensenDepartment of Clinical Sciences, Institute of Tropical Medicine, 2000 Antwerp, Belgium.ORCID 0000-0002-9698-7449
Kris LaukensDepartment of Computer Science, University of Antwerp, 2020 Antwerp, Belgium.ORCID 0000-0002-8217-2564
Bart CuypersDepartment of Computer Science, University of Antwerp, 2020 Antwerp, Belgium.ORCID 0000-0002-7198-1470
University of Antwerp · BEInstituut voor Tropische Geneeskunde · BE

Funding

Fonds Wetenschappelijk Onderzoek 11O1614NFonds Wetenschappelijk Onderzoek 1S48819NFonds Wetenschappelijk Onderzoek 1S71721N
6 · The paper itself

Abstract

Susceptibility for leishmaniasis is largely dependent on host genetic and immune factors. Despite the previously described association of human leukocyte antigen (HLA) gene cluster variants as genetic susceptibility factors for leishmaniasis, little is known regarding the mechanisms that underpin these associations. To better understand this underlying functionality, we first collected all known leishmaniasis-associated HLA variants in a thorough literature review. Next, we aligned and compared the protection- and risk-associated HLA-DRB1 allele sequences. This identified several amino acid polymorphisms that distinguish protection- from risk-associated HLA-DRB1 alleles. Subsequently, T cell epitope binding predictions were carried out across these alleles to map the impact of these polymorphisms on the epitope binding repertoires. For these predictions, we used epitopes derived from entire proteomes of multiple

Indexed as

antigen presentationHLA associationhuman leukocyte antigenimmunogeneticsimmunoinformaticsLeishmanialeishmaniasisvaccine candidates

Identifiers

PMID33803005
PMCPMC8002611
OpenAlexW3138246894

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.