Evidence map›Paper›PMID 33802840›Full record

ArticlePlants (Basel, Switzerland)2021

A Comparison of the Transcriptomes of Cowpeas in Response to Two Different Ionizing Radiations.

Ryulyi Kang, Eunju Seo, Aron Park, Woon Ji Kim, Byeong Hee Kang, Jeong-Hee Lee, Sang Hoon Kim, Si-Yong Kang, Bo-Keun Ha

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Ryulyi KangDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Korea.
Eunju SeoDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Korea.
Aron ParkDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Korea.
Woon Ji KimDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Korea.
Byeong Hee KangDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Korea.
Jeong-Hee LeeSeeders Inc., Daejeon 34912, Korea.
Sang Hoon KimAdvanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup 56212, Korea.ORCID 0000-0002-1790-0836
Si-Yong KangDepartment of Horticulture, College of Industrial Sciences, Kongju National University, Yesan 32439, Korea.
Bo-Keun HaDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Korea.ORCID 0000-0002-2295-365X
Chonnam National University · KRKongju National University · KRKorea Atomic Energy Research Institute · KRSeeders (South Korea) · KR

Funding

National Research Foundation of Korea NRF-2018M2A2A6A05057264
6 · The paper itself

Abstract

In this study, gene expression changes in cowpea plants irradiated by two different types of radiation: proton-beams and gamma-rays were investigated. Seeds of the Okdang cultivar were exposed to 100, 200, and 300 Gy of gamma-rays and proton-beams. In transcriptome analysis, the 32, 75, and 69 differentially expressed genes (DEGs) at each dose of gamma-ray irradiation compared with that of the control were identified. A total of eight genes were commonly up-regulated for all gamma-ray doses. However, there were no down-regulated genes. In contrast, 168, 434, and 387 DEGs were identified for each dose of proton-beam irradiation compared with that of the control. A total of 61 DEGs were commonly up-regulated for all proton-beam doses. As a result of GO and KEGG analysis, the ranks of functional categories according to the number of DEGs were not the same in both treatments and were more diverse in terms of pathways in the proton-beam treatments than gamma-ray treatments. The number of genes related to defense, photosynthesis, reactive oxygen species (ROS), plant hormones, and transcription factors (TF) that were up-/down-regulated was higher in the proton beam treatment than that in gamma ray treatment. Proton-beam treatment had a distinct mutation spectrum and gene expression pattern compared to that of gamma-ray treatment. These results provide important information on the mechanism for gene regulation in response to two ionizing radiations in cowpeas.

Indexed as

cowpeagamma-rayproton-beamradio sensitivityRNA-sequencingtranscriptome

Identifiers

PMID33802840
PMCPMC8002818
OpenAlexW3138118098

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.