Evidence map›Paper›PMID 33802493›Full record

ArticleCancers2021

The Burden of Post-Translational Modification (PTM)-Disrupting Mutations in the Tumor Matrisome.

Elisa Holstein, Annalena Dittmann, Anni Kääriäinen, Vilma Pesola, Jarkko Koivunen, Taina Pihlajaniemi, Alexandra Naba, Valerio Izzi

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

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  10. Proteomic Profiling and Biomarker Discovery in Colorectal Liver Metastases.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Elisa HolsteinFaculty of Biochemistry and Molecular Medicine, University of Oulu, FI-90014 Oulu, Finland.ORCID 0000-0003-0107-5154
Annalena DittmannFaculty of Biochemistry and Molecular Medicine, University of Oulu, FI-90014 Oulu, Finland.
Anni KääriäinenFaculty of Biochemistry and Molecular Medicine, University of Oulu, FI-90014 Oulu, Finland.ORCID 0000-0003-2351-5122
Vilma PesolaFaculty of Biochemistry and Molecular Medicine, University of Oulu, FI-90014 Oulu, Finland.
Jarkko KoivunenFaculty of Biochemistry and Molecular Medicine, University of Oulu, FI-90014 Oulu, Finland.ORCID 0000-0001-8060-555X
Taina PihlajaniemiFaculty of Biochemistry and Molecular Medicine, University of Oulu, FI-90014 Oulu, Finland.
Alexandra NabaDepartment of Physiology and Biophysics, University of Illinois at Chicago, Chicago, IL 60612, USA.ORCID 0000-0002-4796-5614
Valerio IzziFaculty of Biochemistry and Molecular Medicine, University of Oulu, FI-90014 Oulu, Finland.ORCID 0000-0002-9960-4917
University of Oulu · FIUniversity of Illinois Chicago · US

Funding

Academy of Finland 329742Finnish Cancer Institute K. Albin Johansson Cancer Research FellowshipOulun Yliopisto Profi-5 tenure track fund
6 · The paper itself

Abstract

backgroundTo evaluate the occurrence of mutations affecting post-translational modification (PTM) sites in matrisome genes across different tumor types, in light of their genomic and functional contexts and in comparison with the rest of the genome.

methodsThis study spans 9075 tumor samples and 32 tumor types from The Cancer Genome Atlas (TCGA) Pan-Cancer cohort and identifies 151,088 non-silent mutations in the coding regions of the matrisome, of which 1811 affecting known sites of hydroxylation, phosphorylation, N- and O-glycosylation, acetylation, ubiquitylation, sumoylation and methylation PTM.

resultsPTM-disruptive mutations (PTM

conclusionsThough quantitatively minoritarian in the spectrum of matrisome mutations, PTM

Indexed as

extracellular matrix (ECM)matrisomemutationspan-cancerpost-translational modifications (PTM)

Identifiers

PMID33802493
PMCPMC7959462
OpenAlexW3133798676

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.