Evidence map›Paper›PMID 33797591›Full record

ArticleArchives of microbiology2021

Complete genome sequence of the Pseudomonas oleovorans strain ODT-83 isolated from oyster.

Mingshu Yang, Feng Han, Yongxin Yu, Yongjie Wang

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Mingshu YangCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China.
Feng HanCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China.
Yongxin YuCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China.
Yongjie WangCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China. yjwang@shou.edu.cn.ORCID http://orcid.org/0000-0002-7209-585X
Shanghai Ocean University · CNMinistry of Agriculture and Rural Affairs · CNQingdao National Laboratory for Marine Science and Technology · CN

Funding

National Key R&D Program of China 2017YFC1600703National Natural Science Foundation of China 41876195National Natural Science Foundation of China (CN) 31601570
6 · The paper itself

Abstract

A bacterial strain ODT-83 is isolated from oysters, which is capable of adsorbing norovirus (NoV) via histo-blood group antigen-like (HBGA-like) substances. To better understand its genetic background associated with the production of HBGA-like substances, the genome of the ODT-83 was completely sequenced and analyzed. The ODT-83 only contains one circular chromosome, with a length of 5,384,159 bp. Both the 16S rRNA gene phylogeny and the average nucleotide identity (ANI) analyses confirm that the ODT-83 is a new Pseudomonas oleovorans strain. The whole genome encodes a total of 5037 predicted open reading frames (ORFs), 66 tRNA genes and 12 rRNA genes. Two gene clusters are detected on the genome, which are involved in the synthesis of polysaccharides of alginate and Pel, respectively. These results lay the foundation for further research on the interaction between the P. oleovorans strain ODT-83 and NoV.

Indexed as

Genome, BacterialOstreidaePseudomonas oleovoransAnimalsBacterial Typing TechniquesFatty AcidsPhylogenyPseudomonasRNA, Ribosomal, 16SSequence Analysis, DNASpecies SpecificityFatty AcidsRNA, Ribosomal, 16SGenome sequencePolysaccharidesPseudomonas oleovorans

Identifiers

PMID33797591
OpenAlexW3143030925

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.