Evidence map›Paper›PMID 33796864›Full record

ArticleNature cancer2020

Mutational and functional genetics mapping of chemotherapy resistance mechanisms in relapsed acute lymphoblastic leukemia.

Koichi Oshima, Junfei Zhao, Pablo Pérez-Durán, Jessie A Brown, Juan Angel Patiño-Galindo, Timothy Chu, Aidan Quinn, Thomas Gunning, Laura Belver, Alberto Ambesi-Impiombato and 20 more

Abstract read
In one paragraph

Article in Nature cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  19. Balkan journal of medical genetics : BJMG · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Koichi Oshima *Institute for Cancer Genetics, Columbia University, New York, NY, USA.
Junfei Zhao *Department of Systems Biology, Columbia University, New York, NY, USA.
Pablo Pérez-Durán *Institute for Cancer Genetics, Columbia University, New York, NY, USA.
Jessie A Brown *Institute for Cancer Genetics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-2396-5393
Juan Angel Patiño-GalindoDepartment of Systems Biology, Columbia University, New York, NY, USA.
Timothy ChuDepartment of Systems Biology, Columbia University, New York, NY, USA.
Aidan QuinnInstitute for Cancer Genetics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-6557-9186
Thomas GunningInstitute for Cancer Genetics, Columbia University, New York, NY, USA.
Laura BelverInstitute for Cancer Genetics, Columbia University, New York, NY, USA.
Alberto Ambesi-ImpiombatoInstitute for Cancer Genetics, Columbia University, New York, NY, USA.
Valeria ToselloVeneto Institute of Oncology IOV-IRCCS, Padua, Italy.
Zhengqiang WangCenter for Drug Design, College of Pharmacy, University of Minnesota, Minneapolis, MN, USA.
Maria Luisa SulisDepartment of Pediatric Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Motohiro KatoDepartment of Hematology-Oncology, Saitama Children's Medical Center, Saitama, Japan.ORCID http://orcid.org/0000-0001-5145-1774
Katsuyoshi KohDepartment of Hematology-Oncology, Saitama Children's Medical Center, Saitama, Japan.
Maddalena PaganinFondazione Città della Speranza, Istituto di Ricerca Pediatrica, Padova, Italy.
Giuseppe BassoHaematology-Oncology Division, Department of Woman's and Child's Health, University Hospital of Padua, Padua, Italy.
Milagros BalbinMolecular Oncology Laboratory, Instituto Universitario de Oncologia del Principado de Asturias, Hospital Universitario Central de Asturias, Oviedo, Spain.
Concepcion NicolasHematology Service, Hospital Universitario Central de Asturias, Oviedo, Spain.
Julie M Gastier-FosterInstitute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA.
Meenakshi DevidasDepartment of Biostatistics, University of Florida, Gainesville, FL, USA.
Mignon L LohDepartment of Pediatrics, University of California San Francisco, San Francisco, CA, USA.
Elisabeth PaiettaMontefiore Medical Center, Bronx, NY, USA.
Martin S TallmanDepartment of Hematologic Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jacob M RoweShaare Zedek Medical Center, Jerusalem, Israel.
Mark LitzowMayo Clinic, Rochester, MN, USA.
Mark D MindenDepartment of Oncology/Hematology, Princess Margaret Cancer Center, Toronto, ON, Canada.
Jules MeijerinkPrincess Maxima Center for Pediatric Oncology, Utrecht, the Netherlands.
Raul RabadanDepartment of Systems Biology, Columbia University, New York, NY, USA. rr2579@cumc.columbia.edu.ORCID http://orcid.org/0000-0001-7946-9255
Adolfo FerrandoInstitute for Cancer Genetics, Columbia University, New York, NY, USA. af2196@columbia.edu.ORCID http://orcid.org/0000-0002-6212-8574

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
Project-006U10CA180820 · NCI · ECOG-ACRIN MEDICAL RESEARCH FOUNDATION · PI Peter J ODwyer · 2014 to 2026
$167.6M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Children's Oncology Group Statistics &Data Center GrantU10CA098413 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI ANDERSON, JAMES R · 2003 to 2013
$67.5M
COG U24 Funding 2026-2027U24CA196173 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI Mignon Lee-Cheun Loh, Nilsa Del Carmen Ramirez Milan · 2015 to 2026
$62.5M
ECOG-ACRIN Biospecimen Bank to Support NCTNU24CA196172 · NCI · ECOG-ACRIN MEDICAL RESEARCH FOUNDATION · PI STANLEY R. HAMILTON, Scott D Jewell · 2015 to 2026
$41.1M
Nation Center: Multi-Scale Study- Cellular Networks(RMI)U54CA121852 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2015
$37.4M
Support for Human Specimen Banking in NCI-Supported Cancer Clinical TrialsU24CA114766 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI RAMIREZ MILAN, NILSA DEL CARMEN · 2005 to 2014
$14.5M
Montefiore Academic Community NCORP ProgramUG1CA189859 · NCI · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI Balazs Halmos, Della Makower · 2014 to 2026
$10.8M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA013696NCI NIH HHS R01 CA179044NCI NIH HHS R01 CA185486NCI NIH HHS R01 CA216981NCI NIH HHS R35 CA210065NCI NIH HHS U10 CA014958NCI NIH HHS U10 CA017145NCI NIH HHS U10 CA098413NCI NIH HHS U10 CA098543NCI NIH HHS U10 CA180791NCI NIH HHS U10 CA180820NCI NIH HHS U10 CA180827NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899NCI NIH HHS U24 CA114766NCI NIH HHS U24 CA196172NCI NIH HHS U24 CA196173NCI NIH HHS U54 CA121852NCI NIH HHS UG1 CA189859NCI NIH HHS UG1 CA233290NCI NIH HHS UG1 CA233332
6 · The paper itself

Abstract

Multi-agent combination chemotherapy can be curative in acute lymphoblastic leukemia (ALL). Still, patients with primary refractory disease or with relapsed leukemia have a very poor prognosis. Here we integrate an in-depth dissection of the mutational landscape across diagnostic and relapsed pediatric and adult ALL samples with genome-wide CRISPR screen analysis of gene-drug interactions across seven ALL chemotherapy drugs. By combining these analyses, we uncover diagnostic and relapse-specific mutational mechanisms as well as genetic drivers of chemoresistance. Functionally, our data identifies common and drug-specific pathways modulating chemotherapy response and underscores the effect of drug combinations in restricting the selection of resistance-driving genetic lesions. In addition, by identifying actionable targets for the reversal of chemotherapy resistance, these analyses open novel therapeutic opportunities for the treatment of relapse and refractory disease.

Indexed as

Drug Resistance, NeoplasmPrecursor Cell Lymphoblastic Leukemia-LymphomaAdultChildHumansMutationPrognosisRecurrence

Identifiers

PMID33796864
PMCPMC8011577

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.