Evidence map›Paper›PMID 33795843›Full record

ArticleNature chemistry2021

Selective discrimination and classification of G-quadruplex structures with a host-guest sensing array.

Junyi Chen, Briana L Hickey, Linlin Wang, Jiwon Lee, Adam D Gill, Alessia Favero, Roberta Pinalli, Enrico Dalcanale, Richard J Hooley, Wenwan Zhong

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 96 citations in OpenAlex.

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  8. Precise AIE-Based Ternary Co-Assembly for Saccharide Recognition and Classification.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Junyi ChenEnvironmental Toxicology Graduate Program, University of California, Riverside, CA, USA.ORCID http://orcid.org/0000-0001-7453-6623
Briana L HickeyDepartment of Chemistry, University of California, Riverside, CA, USA.
Linlin WangDepartment of Chemistry, University of California, Riverside, CA, USA.
Jiwon LeeDepartment of Chemistry, University of California, Riverside, CA, USA.
Adam D GillDepartment of Biochemistry and Molecular Biology, University of California, Riverside, CA, USA.
Alessia FaveroDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.ORCID http://orcid.org/0000-0002-1106-9818
Roberta PinalliDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.ORCID http://orcid.org/0000-0002-0000-8980
Enrico DalcanaleDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.ORCID http://orcid.org/0000-0001-6964-788X
Richard J HooleyDepartment of Chemistry, University of California, Riverside, CA, USA. richard.hooley@ucr.edu.ORCID http://orcid.org/0000-0003-0033-8653
Wenwan ZhongEnvironmental Toxicology Graduate Program, University of California, Riverside, CA, USA. wenwan.zhong@ucr.edu.ORCID http://orcid.org/0000-0002-3317-3464
University of California, Riverside · USUniversity of Parma · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The secondary structures of nucleic acids have an important influence on their cellular functions but can be difficult to identify and classify quickly. Here, we show that an arrayed suite of synthetic hosts and dyes is capable of fluorescence detection of oligonucleotide secondary structures. Multivariate analysis of different fluorescence enhancements-generated using cationic dyes that show affinity for both DNA G-quadruplexes and the synthetic hosts-enables discrimination between G-quadruplex structures of identical length and highly similar topological types. Different G-quadruplexes that display the same folding topology can also be easily differentiated by the number of G-quartets and sequence differences at the 3' or 5' ends. The array is capable of both differentiation and classification of the G-quadruplex structures at the same time. This simple non-invasive sensing method does not require the discovery and synthesis of specific G-quadruplex binding ligands, but employs a simple multicomponent approach to ensure wide applicability.

Indexed as

G-QuadruplexesCircular DichroismHumansModels, Molecular

Identifiers

PMID33795843
OpenAlexW3144524755

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.