Evidence map›Paper›PMID 33795767›Full record

ArticleScientific reports2021

Transcriptome analysis of human dermal fibroblasts following red light phototherapy.

Evan Austin, Eugene Koo, Alexander Merleev, Denis Torre, Alina Marusina, Guillaume Luxardi, Andrew Mamalis, Roslyn Rivkah Isseroff, Avi Ma'ayan, Emanual Maverakis and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Review
  6. Review
  7. Article
  8. High-throughput transcriptomics.Scientific reports · 2022
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Evan Austin *Department of Dermatology, University of California at Davis, Sacramento, CA, USA.
Eugene Koo *Department of Dermatology, University of California at Davis, Sacramento, CA, USA.
Alexander MerleevDepartment of Dermatology, University of California at Davis, Sacramento, CA, USA.
Denis TorreDepartment of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai Health, New York, NY, USA.
Alina MarusinaDepartment of Dermatology, University of California at Davis, Sacramento, CA, USA.
Guillaume LuxardiDepartment of Dermatology, University of California at Davis, Sacramento, CA, USA.ORCID 0000-0003-3338-0583
Andrew MamalisDepartment of Dermatology, SUNY Downstate, Brooklyn, NY, USA.
Roslyn Rivkah IsseroffDepartment of Dermatology, University of California at Davis, Sacramento, CA, USA.ORCID 0000-0001-7813-0858
Avi Ma'ayanDepartment of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai Health, New York, NY, USA.ORCID 0000-0002-6904-1017
Emanual MaverakisDepartment of Dermatology, University of California at Davis, Sacramento, CA, USA.ORCID 0000-0002-6294-6294
Jared JagdeoDepartment of Dermatology, University of California at Davis, Sacramento, CA, USA. jrjagdeo@gmail.com.
University of California, Davis · USSUNY Downstate Health Sciences University · USIcahn School of Medicine at Mount Sinai · USSacramento VA Medical Center · US

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Gina M Dayton · 2002 to 2026
$84.9M
Light Emitting Diod-Red Light Phototherapy for Skin FibrosisK23GM117309 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI JAGDEO, JARED R · 2016 to 2019
$777k
NCI NIH HHS P30 CA093373NIGMS NIH HHS K23 GM117309
6 · The paper itself

Abstract

Fibrosis occurs when collagen deposition and fibroblast proliferation replace healthy tissue. Red light (RL) may improve skin fibrosis via photobiomodulation, the process by which photosensitive chromophores in cells absorb visible or near-infrared light and undergo photophysical reactions. Our previous research demonstrated that high fluence RL reduces fibroblast proliferation, collagen deposition, and migration. Despite the identification of several cellular mechanisms underpinning RL phototherapy, little is known about the transcriptional changes that lead to anti-fibrotic cellular responses. Herein, RNA sequencing was performed on human dermal fibroblasts treated with RL phototherapy. Pathway enrichment and transcription factor analysis revealed regulation of extracellular matrices, proliferation, and cellular responses to oxygen-containing compounds following RL phototherapy. Specifically, RL phototherapy increased the expression of MMP1, which codes for matrix metalloproteinase-1 (MMP-1) and is responsible for remodeling extracellular collagen. Differential regulation of MMP1 was confirmed with RT-qPCR and ELISA. Additionally, RL upregulated PRSS35, which has not been previously associated with skin activity, but has known anti-fibrotic functions. Our results suggest that RL may benefit patients by altering fibrotic gene expression.

Indexed as

TranscriptomeAdultCell MovementCell ProliferationCollagenFemaleFibroblastsFibrosisGene Expression ProfilingHumansMaleMatrix Metalloproteinase 1Middle AgedOxidative StressOxygenPhototherapyCollagenMatrix Metalloproteinase 1MMP1 protein, humanOxygenReactive Oxygen SpeciesTranscription Factors

Identifiers

PMID33795767
PMCPMC8017006
OpenAlexW3151712245

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.