Evidence map›Paper›PMID 33795432›Full record

ArticleScience (New York, N.Y.)2021

Designed proteins assemble antibodies into modular nanocages.

Robby Divine, Ha V Dang, George Ueda, Jorge A Fallas, Ivan Vulovic, William Sheffler, Shally Saini, Yan Ting Zhao, Infencia Xavier Raj, Peter A Morawski and 20 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
18.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 176 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Affinity Enhancement in Discrete Multivalent MegaMolecules.Chembiochem : a European journal of chemical biology · 2026
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
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  13. Review
  14. Precise Regulation of Membrane Proteins: From Physical Technology to Biomolecular Strategy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. From sequence to scaffold: Computational design of protein nanoparticle vaccines from AlphaFold2-predicted building blocks.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 5 institutions in 3 countries.

Robby DivineDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0003-1678-1385
Ha V DangDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0003-1173-9241
George UedaDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-9792-7149
Jorge A FallasDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-1431-820X
Ivan VulovicDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0003-4208-6183
William ShefflerInstitute for Protein Design, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-3659-9559
Shally SainiDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-0430-8788
Yan Ting ZhaoDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Infencia Xavier RajDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-4889-4643
Peter A MorawskiBenaroya Research Institute, Seattle, WA 98101, USA.ORCID https://orcid.org/0000-0001-9159-4032
Madeleine F JenneweinVaccines and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98019, USA.ORCID https://orcid.org/0000-0001-6633-7413
Leah J HomadVaccines and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98019, USA.ORCID https://orcid.org/0000-0001-8421-6519
Yu-Hsin WanVaccines and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98019, USA.ORCID https://orcid.org/0000-0003-2826-9928
Marti R TooleyInstitute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Franziska SeegerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Ali EtemadiInstitute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Mitchell L FahningBenaroya Research Institute, Seattle, WA 98101, USA.ORCID https://orcid.org/0000-0001-9352-4409
James LazarovitsDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0001-5414-9976
Alex RoedererInstitute for Protein Design, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-6168-0527
Alexandra C WallsDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-9636-8330
Lance StewartInstitute for Protein Design, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0003-4264-5125
Mohammadali MazloomiMedical Biotechnology Department, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran.ORCID https://orcid.org/0000-0001-5370-3111
Neil P KingDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-2978-4692
Daniel J CampbellBenaroya Research Institute, Seattle, WA 98101, USA.ORCID https://orcid.org/0000-0002-9652-7178
Andrew T McGuireVaccines and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98019, USA.ORCID https://orcid.org/0000-0003-1841-6859
Leonidas StamatatosVaccines and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98019, USA.ORCID https://orcid.org/0000-0002-1106-7097
Hannele Ruohola-BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-5588-4531
Julie MathieuInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA 98109, USA.ORCID https://orcid.org/0000-0002-3826-3549
David VeeslerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0002-6019-8675
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. dabaker@uw.edu.ORCID https://orcid.org/0000-0001-7896-6217
University of Washington · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZABenaroya Research InstituteHoward Hughes Medical Institute · USTehran University of Medical Sciences · IR

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
NRSA Training CoreTL1TR002318 · NCATS · UNIVERSITY OF WASHINGTON · PI Megan Moore · 2017 to 2026
$8.4M
Comprehensive Training in Inter-Disciplinary Oral Health ResearchT90DE021984 · NIDCR · UNIVERSITY OF WASHINGTON · PI Robert Aaron Cornell · 2012 to 2026
$7.9M
Unraveling the bat humoral immune response against zoonotic viruses to guide the design of next-generation therapeuticsDP1AI158186 · NIAID · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2020 to 2024
$5.4M
Regulation of cutaneous immunity and tissue-repair by a specialized population of CD4+ T cellsR01AI127726 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI CAMPBELL, DANIEL J, GRATZ, IRIS KARINA · 2017 to 2021
$2.8M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
Acquisition of a high resolution, high throughput cryo-electron microscopeS10OD023476 · OD · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2017 to 2017
$2.0M
Structural Studies of Coronavirus Fusion ProteinsR01GM120553 · NIGMS · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2016 to 2020
$1.7M
Howard Hughes Medical InstituteNCATS NIH HHS TL1 TR002318NCI NIH HHS P30 CA015704NIAID NIH HHS DP1 AI158186NIAID NIH HHS HHSN272201700059CNIAID NIH HHS R01 AI127726NIDCR NIH HHS T90 DE021984NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM105404NIGMS NIH HHS R01 GM120553NIH HHS S10 OD023476
6 · The paper itself

Abstract

Multivalent display of receptor-engaging antibodies or ligands can enhance their activity. Instead of achieving multivalency by attachment to preexisting scaffolds, here we unite form and function by the computational design of nanocages in which one structural component is an antibody or Fc-ligand fusion and the second is a designed antibody-binding homo-oligomer that drives nanocage assembly. Structures of eight nanocages determined by electron microscopy spanning dihedral, tetrahedral, octahedral, and icosahedral architectures with 2, 6, 12, and 30 antibodies per nanocage, respectively, closely match the corresponding computational models. Antibody nanocages targeting cell surface receptors enhance signaling compared with free antibodies or Fc-fusions in death receptor 5 (DR5)-mediated apoptosis, angiopoietin-1 receptor (Tie2)-mediated angiogenesis, CD40 activation, and T cell proliferation. Nanocage assembly also increases severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pseudovirus neutralization by α-SARS-CoV-2 monoclonal antibodies and Fc-angiotensin-converting enzyme 2 (ACE2) fusion proteins.

Indexed as

NanostructuresProtein EngineeringSignal TransductionAngiopoietinsAntibodiesAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralB-LymphocytesCD40 AntigensCell Line, TumorCell ProliferationComputer SimulationGenes, SyntheticHumansImmunoglobulin Fc FragmentsAngiopoietinsAntibodiesAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralCD40 AntigensImmunoglobulin Fc FragmentsReceptors, TNF-Related Apoptosis-Inducing LigandReceptor, TIE-2TEK protein, humanTNFRSF10B protein, human

Identifiers

PMID33795432
PMCPMC8592034
OpenAlexW3148609706

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.