Evidence map›Paper›PMID 33793913›Full record

ArticlePlant physiology2021

Transport of UDP-rhamnose by URGT2, URGT4, and URGT6 modulates rhamnogalacturonan-I length.

Susana Saez-Aguayo, Juan Pablo Parra-Rojas, Pablo Sepúlveda-Orellana, Jonathan Celiz-Balboa, Verónica Arenas-Morales, Christine Sallé, Hernán Salinas-Grenet, Asier Largo-Gosens, Helen M North, Marie-Christine Ralet and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Susana Saez-AguayoCentro de Biotecnología Vegetal, Universidad Andrés Bello, Santiago 8370146, Chile.
Juan Pablo Parra-RojasCentro de Biotecnología Vegetal, Universidad Andrés Bello, Santiago 8370146, Chile.
Pablo Sepúlveda-OrellanaCentro de Biotecnología Vegetal, Universidad Andrés Bello, Santiago 8370146, Chile.
Jonathan Celiz-BalboaCentro de Biotecnología Vegetal, Universidad Andrés Bello, Santiago 8370146, Chile.
Verónica Arenas-MoralesCentro de Biotecnología Vegetal, Universidad Andrés Bello, Santiago 8370146, Chile.
Christine SalléInstitut Jean-Pierre Bourgin, UMR1318 INRAE-AgroParisTech, F-78026 Versailles Cedex, France.
Hernán Salinas-GrenetCentro de Biotecnología Vegetal, Universidad Andrés Bello, Santiago 8370146, Chile.
Asier Largo-GosensCentro de Biotecnología Vegetal, Universidad Andrés Bello, Santiago 8370146, Chile.
Helen M NorthInstitut Jean-Pierre Bourgin, UMR1318 INRAE-AgroParisTech, F-78026 Versailles Cedex, France.
Marie-Christine RaletUR1268 BIA, INRAE, 44300 Nantes, France.
Ariel OrellanaCentro de Biotecnología Vegetal, Universidad Andrés Bello, Santiago 8370146, Chile.
Universidad Andrés Bello · CLAgroParisTech · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhamnogalacturonan-I biosynthesis occurs in the lumen of the Golgi apparatus, a compartment where UDP-Rhamnose and UDP-Galacturonic Acid are the main substrates for synthesis of the backbone polymer of pectin. Recent studies showed that UDP-Rha is transported from the cytosol into the Golgi apparatus by a family of six UDP-rhamnose/UDP-galactose transporters (URGT1-6). In this study, analysis of adherent and soluble mucilage (SM) of Arabidopsis thaliana seeds revealed distinct roles of URGT2, URGT4, and URGT6 in mucilage biosynthesis. Characterization of SM polymer size showed shorter chains in the urgt2 urgt4 and urgt2 urgt4 urgt6 mutants, suggesting that URGT2 and URGT4 are mainly involved in Rhamnogalacturonan-I (RG-I) elongation. Meanwhile, mutants in urgt6 exhibited changes only in adherent mucilage (AM). Surprisingly, the estimated number of RG-I polymer chains present in urgt2 urgt4 and urgt2 urgt4 urgt6 mutants was higher than in wild-type. Interestingly, the increased number of shorter RG-I chains was accompanied by an increased amount of xylan. In the urgt mutants, expression analysis of other genes involved in mucilage biosynthesis showed some compensation. Studies of mutants of transcription factors regulating mucilage formation indicated that URGT2, URGT4, and URGT6 are likely part of a gene network controlled by these regulators and involved in RG-I synthesis. These results suggest that URGT2, URGT4, and URGT6 play different roles in the biosynthesis of mucilage, and the lack of all three affects the production of shorter RG-I polymers and longer xylan domains.

Indexed as

Arabidopsis ProteinsGene Expression Regulation, PlantMonosaccharide Transport ProteinsN-Glycosyl HydrolasesPectinsRhamnogalacturonansArabidopsis ProteinsAT1G21070 protein, ArabidopsisMonosaccharide Transport ProteinsN-Glycosyl HydrolasesPectinsrhamnogalacturonan IRhamnogalacturonansURH1 protein, Arabidopsis

Identifiers

PMID33793913
PMCPMC8133686
OpenAlexW3141638914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.