Evidence map›Paper›PMID 33793861›Full record

ReviewThe Plant cell2021

Anno genominis XX: 20 years of Arabidopsis genomics.

Nicholas J Provart, Siobhan M Brady, Geraint Parry, Robert J Schmitz, Christine Queitsch, Dario Bonetta, Jamie Waese, Korbinian Schneeberger, Ann E Loraine

Abstract readReview
In one paragraph

Review in The Plant cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Structural Variation and Its Roles in Plant Genomes.Plants (Basel, Switzerland) · 2026
    Review
  2. Cross-species modeling of plant genomes at single-nucleotide resolution using a pretrained DNA language model.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Arabidopsis research in 2030: Translating the computable plant.The Plant journal : for cell and molecular biology · 2025
    Review
  5. Article
  6. Review
  7. Review
  8. Bioinformatic Tools for Exploring the SUMO Gene Network: An Update.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nicholas J ProvartDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario, M5S 3B2, Canada.ORCID 0000-0001-5551-7232
Siobhan M BradyDepartment of Plant Biology and Genome Center, University of California, Davis, California, 95616, USA.ORCID 0000-0001-9424-8055
Geraint ParryGARNet, School of Biosciences, Cardiff University, Cardiff, CF10 3AX, UK.ORCID 0000-0001-7791-5688
Robert J SchmitzDepartment of Genetics, University of Georgia, Georgia, 30602, USA.ORCID 0000-0001-7538-6663
Christine QueitschDepartment of Genome Sciences, School of Medicine, University of Washington, Seattle, Washington, 98195, USA.ORCID 0000-0002-0905-4705
Dario BonettaFaculty of Science, Ontario Tech University, Oshawa, Ontario, L1G 0C5, Canada.ORCID 0000-0001-9883-3737
Jamie WaeseDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario, M5S 3B2, Canada.ORCID 0000-0001-8783-9914
Korbinian SchneebergerDepartment of Chromosome Biology, Max Planck Institute for Plant Breeding Research, D-50829, Cologne, Germany.ORCID 0000-0002-5512-0443
Ann E LoraineDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA.

Funding

Integrated Genome Browser and IGB AppsR01GM103463 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI LORAINE, ANN E · 2012 to 2019
$2.7M
Visualization software for genomicsR35GM139609 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI LORAINE, ANN E · 2021 to 2025
$1.8M
Investigating natural epigenetic variation and the origins and inheritance of spontaneous epimutationsR01GM134682 · NIGMS · UNIVERSITY OF GEORGIA · PI SCHMITZ, ROBERT J. · 2019 to 2020
$744k
Biotechnology and Biological Sciences Research Council BB/M004376/1Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM103463NIGMS NIH HHS R01 GM134682NIGMS NIH HHS R35 GM139609
6 · The paper itself

Abstract

Twenty years ago, the Arabidopsis thaliana genome sequence was published. This was an important moment as it was the first sequenced plant genome and explicitly brought plant science into the genomics era. At the time, this was not only an outstanding technological achievement, but it was characterized by a superb global collaboration. The Arabidopsis genome was the seed for plant genomic research. Here, we review the development of numerous resources based on the genome that have enabled discoveries across plant species, which has enhanced our understanding of how plants function and interact with their environments.

Indexed as

Genome, PlantHigh-Throughput Nucleotide SequencingArabidopsisDatabases, GeneticEpigenomicsGenomicsRNA SplicingSequence Analysis, RNASingle-Cell Analysis

Identifiers

PMID33793861
PMCPMC8226293

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.