Evidence map›Paper›PMID 33793860›Full record

ArticleThe Plant cell2021

TOR coordinates nucleotide availability with ribosome biogenesis in plants.

Michael Busche, M Regina Scarpin, Robert Hnasko, Jacob O Brunkard

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
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  14. Genetic suppressor ofFrontiers in plant science · 2025
    Article
  15. Article
  16. Review
  17. TORC pathway intersects with a calcium sensor kinase network to regulate potassium sensing inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michael BuscheDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0001-8845-3300
M Regina ScarpinDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-6454-7721
Robert HnaskoProduce Safety and Microbiology Research Unit, Western Regional Research Center, Pacific West Area, USDA Agricultural Research Service, Albany, CA 94710,USA.ORCID 0000-0001-6133-5056
Jacob O BrunkardDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0001-6407-9393
Agricultural Research Service · US

Funding

An aminoacyl tRNA synthetase is a nitrogen sensor that activates TOR in plantsDP5OD023072 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI BRUNKARD, JACOB O · 2016 to 2020
$1.6M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIH HHS DP5 OD023072NIH HHS S10 OD018174
6 · The paper itself

Abstract

TARGET OF RAPAMYCIN (TOR) is a conserved eukaryotic Ser/Thr protein kinase that coordinates growth and metabolism with nutrient availability. We conducted a medium-throughput functional genetic screen to discover essential genes that promote TOR activity in plants, and identified a critical regulatory enzyme, cytosolic phosphoribosyl pyrophosphate (PRPP) synthetase (PRS4). PRS4 synthesizes cytosolic PRPP, a key upstream metabolite in nucleotide synthesis and salvage pathways. We found that prs4 knockouts are embryo-lethal in Arabidopsis thaliana, and that silencing PRS4 expression in Nicotiana benthamiana causes pleiotropic developmental phenotypes, including dwarfism, aberrant leaf shape, and delayed flowering. Transcriptomic analysis revealed that ribosome biogenesis is among the most strongly repressed processes in prs4 knockdowns. Building on these results, we discovered that TOR activity is inhibited by chemical or genetic disruption of nucleotide biosynthesis, but that this effect can be reversed by supplying plants with nucleobases. Finally, we show that TOR transcriptionally promotes nucleotide biosynthesis to support the demands of ribosomal RNA synthesis. We propose that TOR coordinates ribosome biogenesis with nucleotide availability in plants to maintain metabolic homeostasis and support growth.

Indexed as

ArabidopsisArabidopsis ProteinsCytosolGene SilencingGenes, PlantNicotianaNucleotidesPhosphatidylinositol 3-KinasesPhosphorusPlant CellsPlant DevelopmentPurinesPyrimidinesRibosomesTranscriptomeArabidopsis ProteinsNucleotidesPhosphatidylinositol 3-KinasesPhosphoruspurinePurinespyrimidinePyrimidinesTOR protein, Arabidopsis

Identifiers

PMID33793860
PMCPMC8254494
OpenAlexW3142043833

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.