Evidence map›Paper›PMID 33793564›Full record

ArticlePLoS computational biology2021

Using Hawkes Processes to model imported and local malaria cases in near-elimination settings.

H Juliette T Unwin, Isobel Routledge, Seth Flaxman, Marian-Andrei Rizoiu, Shengjie Lai, Justin Cohen, Daniel J Weiss, Swapnil Mishra, Samir Bhatt

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

H Juliette T UnwinMRC Centre for Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College, London, United Kingdom.ORCID 0000-0002-9120-4003
Isobel RoutledgeMRC Centre for Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College, London, United Kingdom.ORCID 0000-0002-0354-4076
Seth FlaxmanDepartment of Mathematics, Imperial College, London, United Kingdom.
Marian-Andrei RizoiuData Science Institute, University of Technology Sydney, Sydney, Australia.ORCID 0000-0003-0381-669X
Shengjie LaiWorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, United Kingdom.ORCID 0000-0001-9781-8148
Justin CohenClinton Health Access Initiative, Boston, Massachusetts, United States of America.ORCID 0000-0003-4481-6784
Daniel J WeissMalaria Atlas Project, Big Data Institute, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.ORCID 0000-0002-6175-5648
Swapnil MishraMRC Centre for Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College, London, United Kingdom.ORCID 0000-0002-8759-5902
Samir BhattMRC Centre for Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College, London, United Kingdom.ORCID 0000-0002-0891-4611

Funding

Department of Health RDA02Medical Research Council MR/R015600/1
6 · The paper itself

Abstract

Developing new methods for modelling infectious diseases outbreaks is important for monitoring transmission and developing policy. In this paper we propose using semi-mechanistic Hawkes Processes for modelling malaria transmission in near-elimination settings. Hawkes Processes are well founded mathematical methods that enable us to combine the benefits of both statistical and mechanistic models to recreate and forecast disease transmission beyond just malaria outbreak scenarios. These methods have been successfully used in numerous applications such as social media and earthquake modelling, but are not yet widespread in epidemiology. By using domain-specific knowledge, we can both recreate transmission curves for malaria in China and Eswatini and disentangle the proportion of cases which are imported from those that are community based.

Indexed as

Disease OutbreaksModels, StatisticalAlgorithmsChinaDisease EradicationEswatiniHumansMalariaMosquito Vectors

Identifiers

PMID33793564
PMCPMC8043404

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.