Evidence map›Paper›PMID 33792219›Full record

ArticleHaematologica2022

Subtype-specific and co-occurring genetic alterations in B-cell non-Hodgkin lymphoma.

Man Chun John Ma, Saber Tadros, Alyssa Bouska, Tayla Heavican, Haopeng Yang, Qing Deng, Dalia Moore, Ariz Akhter, Keenan Hartert, Neeraj Jain and 26 more

Open access · goldAbstract read
In one paragraph

Article in Haematologica, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 2 pooled it
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 2 syntheses or guidelines pooled it, 71 citations in OpenAlex.

  1. A genetic profiling guideline to support diagnosis and clinical management of lymphomas.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
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  11. RHOA controls oncogenic B cell receptor signaling in aggressive lymphoma.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 9 institutions in 5 countries.

Man Chun John MaDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Saber TadrosDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Alyssa BouskaDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE.
Tayla HeavicanDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE.
Haopeng YangDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Qing DengDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Dalia MooreEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, NE.
Ariz AkhterDepartment of Pathology and Laboratory Medicine, University of Calgary, Calgary, AB.
Keenan HartertEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, NE.
Neeraj JainDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Jordan ShowellDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Sreejoyee GhoshDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Lesley StreetSection of Hematology, Department of Medicine, University of Calgary, Calgary, AB.
Marta DavidsonSection of Hematology, Department of Medicine, University of Calgary, Calgary, AB.
Christopher CareyNorthern Institute for Research, Newcastle University, Newcastle upon Tyne, England.
Joshua TobinDiamantina Institute, University of Queensland, QLD.
Deepak PerumalDivision of Hematology and Medical Oncology, Icahn School of Medicine at Mount Sinai, New York, NY.
Julie M VoseDepartment of Internal Medicine, Division of Hematology-Oncology, University of Nebraska Medical Center, Omaha, NE.
Matthew A LunningDepartment of Internal Medicine, Division of Hematology-Oncology, University of Nebraska Medical Center, Omaha, NE.
Aliyah R SohaniDepartment of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, MA.
Benjamin J ChenDepartment of Pathology, University of Massachusetts Medical School, UMass Memorial Medical Center, Worcester, MA.
Shannon BuckleyDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE.
Loretta J NastoupilDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
R Eric DavisDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Jason R WestinDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Nathan H FowlerDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Samir ParekhDivision of Hematology and Medical Oncology, Icahn School of Medicine at Mount Sinai, New York, NY.
Maher GandhiDiamantina Institute, University of Queensland, QLD.
Sattva NeelapuDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX.
Douglas StewartSection of Hematology, Department of Medicine, University of Calgary, Calgary, AB.
Kapil BhallaDepartment of Pathology, Brigham and Womens Hospital, Boston, MA.
Javeed IqbalDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE.
Timothy GreinerDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE.
Scott J RodigDepartment of Genomic Medicine, University of Texas MD Anderson Cancer Center, Houston, TX.
Adnan MansoorSection of Hematology, Department of Medicine, University of Calgary, Calgary, AB.
Michael R GreenDepartment of Lymphoma and Myeloma, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Genomic Medicine, University of Texas MD Anderson Cancer Center, Houston, TX, USA; Center for Cancer Epigenetics, University of Texas MD Anderson Cancer Center, Houston, TX. mgreen5@mdanderson.org.
The University of Texas MD Anderson Cancer Center · USUniversity of Nebraska Medical Center · USUniversity of Calgary · CAIcahn School of Medicine at Mount Sinai · USRetina Institute · USBrigham and Women's Hospital · USMassachusetts General Hospital · USNewcastle University · GBUMass Memorial Medical Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Joann B. Sweasy · 1985 to 2026
$55.0M
Identifying/Targeting Mechanisms of Lymphomagenesis Driven by CREBBP InactivationR01CA201380 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Michael Richard Green · 2016 to 2026
$3.5M
NCI NIH HHS P30 CA016672NCI NIH HHS P30 CA036727NCI NIH HHS R01 CA201380
6 · The paper itself

Abstract

B-cell non-Hodgkin lymphoma (B-NHL) encompasses multiple clinically and phenotypically distinct subtypes of malignancy with unique molecular etiologies. Common subtypes of B-NHL, such as diffuse large B-cell lymphoma, have been comprehensively interrogated at the genomic level, but rarer subtypes, such as mantle cell lymphoma, remain less extensively characterized. Furthermore, multiple B-NHL subtypes have thus far not been comprehensively compared using the same methodology to identify conserved or subtype-specific patterns of genomic alterations. Here, we employed a large targeted hybrid-capture sequencing approach encompassing 380 genes to interrogate the genomic landscapes of 685 B-NHL tumors at high depth, including diffuse large B-cell lymphoma, mantle cell lymphoma, follicular lymphoma, and Burkitt lymphoma. We identified conserved hallmarks of B-NHL that were deregulated in the majority of tumors from each subtype, including frequent genetic deregulation of the ubiquitin proteasome system. In addition, we identified subtype-specific patterns of genetic alterations, including clusters of co-occurring mutations and DNA copy number alterations. The cumulative burden of mutations within a single cluster were more discriminatory of B-NHL subtypes than individual mutations, implicating likely patterns of genetic cooperation that contribute to disease etiology. We therefore provide the first cross-sectional analysis of mutations and DNA copy number alterations across major B-NHL subtypes and a framework of co-occurring genetic alterations that deregulate genetic hallmarks and likely cooperate in lymphomagenesis.

Indexed as

Burkitt LymphomaLymphoma, FollicularLymphoma, Large B-Cell, DiffuseAdultCross-Sectional StudiesHumansMutation

Identifiers

PMID33792219
PMCPMC8883549
OpenAlexW3149640503

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.