Evidence map›Paper›PMID 33792206›Full record

ArticleThe FEBS journal2021

Conserved residues Glu37 and Trp229 play an essential role in protein folding of β-lactamase.

Aleksandra Chikunova, Max P Manley, Misbha Ud Din Ahmad, Tuğçe Bilman, Anastassis Perrakis, Marcellus Ubbink

Open access · hybridAbstract read
In one paragraph

Article in The FEBS journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Stability and dynamics of extradenticle modulates its function.Current research in structural biology · 2024
    Article
  2. Microbiology spectrum · 2023
    Article
  3. The biogenesis of β-lactamase enzymes.Microbiology (Reading, England) · 2022
    Review
  4. The roles of highly conserved, non-catalytic residues in class A β-lactamases.Protein science : a publication of the Protein Society · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Aleksandra ChikunovaLeiden Institute of Chemistry, Leiden University, the Netherlands.
Max P ManleyLeiden Institute of Chemistry, Leiden University, the Netherlands.
Misbha Ud Din AhmadOncode Institute and Division of Biochemistry, the Netherlands Cancer Institute, Amsterdam, the Netherlands.
Tuğçe BilmanLeiden Institute of Chemistry, Leiden University, the Netherlands.
Anastassis PerrakisOncode Institute and Division of Biochemistry, the Netherlands Cancer Institute, Amsterdam, the Netherlands.
Marcellus UbbinkLeiden Institute of Chemistry, Leiden University, the Netherlands.ORCID 0000-0002-2615-6914
Leiden University · NLThe Netherlands Cancer Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Evolutionary robustness requires that the number of highly conserved amino acid residues in proteins is minimized. In enzymes, such conservation is observed for catalytic residues but also for some residues in the second shell or even further from the active site. β-Lactamases evolve in response to changing antibiotic selection pressures and are thus expected to be evolutionarily robust, with a limited number of highly conserved amino acid residues. As part of the effort to understand the roles of conserved residues in class A β-lactamases, we investigate the reasons leading to the conservation of two amino acid residues in the β-lactamase BlaC, Glu37, and Trp229. Using site-directed mutagenesis, we have generated point mutations of these residues and observed a drastic decrease in the levels of soluble protein produced in Escherichia coli, thus abolishing completely the resistance of bacteria against β-lactam antibiotics. However, the purified proteins are structurally and kinetically very similar to the wild-type enzyme, only differing by exhibiting a slightly lower melting temperature. We conclude that conservation of Glu37 and Trp229 is solely caused by an essential role in the folding process, and we propose that during folding Glu37 primes the formation of the central β-sheet and Trp229 contributes to the hydrophobic collapse into a molten globule. ENZYME: EC 3.5.2.6. DATABASE: Structural data are available in PDB database under the accession number 7A5U.

Indexed as

Protein ConformationAmino Acid SequenceAmino Acid SubstitutionAnti-Bacterial Agentsbeta-LactamasesCatalytic DomainConserved SequenceDrug Resistance, BacterialEscherichia coliHumansKineticsMutagenesis, Site-DirectedProtein FoldingAnti-Bacterial Agentsbeta-LactamasesenzymeMycobacteriumprotein evolutionprotein foldingprotein robustness

Identifiers

PMID33792206
PMCPMC8518976
OpenAlexW3151987357

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.