Evidence map›Paper›PMID 33792032›Full record

ArticleBiopolymers2021

SAXS structure of homodimeric oxyHemoglobin III from bivalve Lucina pectinata.

Darya Marchany-Rivera, Rafael A Estremera-Andújar, Carlos Nieves-Marrero, Carlos R Ruiz-Martínez, William Bauer, Juan López-Garriga

Abstract read
In one paragraph

Article in Biopolymers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Small-angle X-ray scattering studies of enzymes.Current opinion in chemical biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Darya Marchany-RiveraChemistry Department and Industrial Biotechnology Program, University of Puerto Rico, Mayagüez, Puerto Rico.
Rafael A Estremera-AndújarNatural Sciences Department, University of Puerto Rico, Aguadilla, Puerto Rico.
Carlos Nieves-MarreroNatural Sciences Department, University of Puerto Rico, Aguadilla, Puerto Rico.
Carlos R Ruiz-MartínezNatural Sciences Department, University of Puerto Rico, Aguadilla, Puerto Rico.
William BauerHauptman-Woodward Medical Research Institute, Buffalo, New York, USA.
Juan López-GarrigaChemistry Department and Industrial Biotechnology Program, University of Puerto Rico, Mayagüez, Puerto Rico.ORCID https://orcid.org/0000-0002-5506-3434

Funding

SCIENCE AND TECHNOLOGY COMPETENCY & EDUCATION CORE (STCE)P20GM103475 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI Humberto Guillermo Ortiz-Zuazaga · 2012 to 2026
$52.9M
Alfred P Sloan Minority PhD Program 2010-3-02BioXFEL Science and Technology Center STC-1231306NIGMS NIH HHS P20 GM103475NIH INBRE PR P20GM103475
6 · The paper itself

Abstract

Hemoglobin III (HbIII) is one of the two oxygen reactive hemoproteins present in the bivalve, Lucina pectinata. The clam inhabits a sulfur-rich environment and HbIII is the only hemoprotein present in the system which does not yet have a structure described elsewhere. It is known that HbIII exists as a heterodimer with hemoglobin II (HbII) to generate the stable Oxy(HbII-HbIII) complex but it remains unknown if HbIII can form a homodimeric species. Here, a new chromatographic methodology to separate OxyHbIII from the HbII-HbIII dimer has been developed, employing a fast performance liquid chromatography and ionic exchange chromatography column. The nature of OxyHbIII in solution at concentrations from 1.6 mg/mL to 20.4 mg/mL was studied using small angle X-ray scattering (SAXS). The results show that at all concentrations, the Oxy(HbIII-HbIII) dimer dominates in solution. However, as the concentration increases to nonphysiological values, 20.4 mg/mL, HbIII forms a 30% tetrameric fraction. Thus, there is a direct relationship between the Oxy(HbIII-HbIII) oligomeric form and hemoglobin concentration. We suggest it is likely that the OxyHbIII dimer contributes to active oxygen transport in tissues of L pectinata, where the Oxy(HbII-HbIII) complex is not present.

Indexed as

Protein MultimerizationScattering, Small AngleAmino Acid SequenceAnimalsBivalviaCrystallography, X-RayElectrophoresis, Polyacrylamide GelHemeHydrogen SulfideOxyhemoglobinsProtein ConformationSequence Homology, Amino AcidTandem Mass SpectrometryX-Ray DiffractionHemeHydrogen SulfideOxyhemoglobinshemeproteinsprotein oligomerizationSAXS

Identifiers

PMID33792032
PMCPMC8265735

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.