Evidence map›Paper›PMID 33791593›Full record

ArticleNature machine intelligence2020

A Shallow Convolutional Neural Network Predicts Prognosis of Lung Cancer Patients in Multi-Institutional CT-Image Data.

Pritam Mukherjee, Mu Zhou, Edward Lee, Anne Schicht, Yoganand Balagurunathan, Sandy Napel, Robert Gillies, Simon Wong, Alexander Thieme, Ann Leung and 1 more

Abstract read
In one paragraph

Article in Nature machine intelligence, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

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  19. A 3D lung lesion variational autoencoder.Cell reports methods · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Pritam MukherjeeStanford Center for Biomedical Informatics, Department of Medicine, Stanford University, Palo Alto, CA.
Mu ZhouStanford Center for Biomedical Informatics, Department of Medicine, Stanford University, Palo Alto, CA.
Edward LeeDepartment of Electrical Engineering, Stanford University, Palo Alto, CA.
Anne SchichtDepartment of Radiation Oncology and Radiotherapy, Charité Universitätsmedizin, Berlin, Germany.
Yoganand BalagurunathanDepartment of Radiology, Moffitt Cancer Center, Tampa, FL.
Sandy NapelDepartment of Radiology, Stanford University Medical Center, Palo Alto, CA.
Robert GilliesDepartment of Radiology, Moffitt Cancer Center, Tampa, FL.
Simon WongDepartment of Electrical Engineering, Stanford University, Palo Alto, CA.
Alexander ThiemeDepartment of Radiation Oncology and Radiotherapy, Charité Universitätsmedizin, Berlin, Germany.
Ann LeungDepartment of Radiology, Stanford University Medical Center, Palo Alto, CA.
Olivier GevaertStanford Center for Biomedical Informatics, Department of Medicine, Stanford University, Palo Alto, CA.

Funding

Computing, Optimizing, and Evaluating Quantitative Cancer Imaging BiomarkersU01CA187947 · NCI · STANFORD UNIVERSITY · PI NAPEL, SANDY A., RUBIN, DANIEL L · 2015 to 2019
$2.9M
Radiogenomics Framework for Non-Invasive Personalized MedicineR01EB020527 · NIBIB · STANFORD UNIVERSITY · PI GEVAERT, OLIVIER · 2015 to 2018
$2.3M
Radiogenomics framework for non-invasive personalized medicineR56EB020527 · NIBIB · STANFORD UNIVERSITY · PI GEVAERT, OLIVIER · 2019 to 2019
$444k
NCI NIH HHS U01 CA187947NIBIB NIH HHS R01 EB020527NIBIB NIH HHS R56 EB020527
6 · The paper itself

Abstract

Lung cancer is the most common fatal malignancy in adults worldwide, and non-small cell lung cancer (NSCLC) accounts for 85% of lung cancer diagnoses. Computed tomography (CT) is routinely used in clinical practice to determine lung cancer treatment and assess prognosis. Here, we developed LungNet, a shallow convolutional neural network for predicting outcomes of NSCLC patients. We trained and evaluated LungNet on four independent cohorts of NSCLC patients from four medical centers: Stanford Hospital (n = 129), H. Lee Moffitt Cancer Center and Research Institute (n = 185), MAASTRO Clinic (n = 311) and Charité - Universitätsmedizin (n=84). We show that outcomes from LungNet are predictive of overall survival in all four independent survival cohorts as measured by concordance indices of 0.62, 0.62, 0.62 and 0.58 on cohorts 1, 2, 3, and 4, respectively. Further, the survival model can be used, via transfer learning, for classifying benign vs malignant nodules on the Lung Image Database Consortium (n = 1010), with improved performance (AUC=0.85) versus training from scratch (AUC=0.82). LungNet can be used as a noninvasive predictor for prognosis in NSCLC patients and can facilitate interpretation of CT images for lung cancer stratification and prognostication.

Identifiers

PMID33791593
PMCPMC8008967

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.