Evidence map›Paper›PMID 33791390›Full record

ArticleJournal of immunology research2021

Transcriptional Profiling Reveals Kidney Neutrophil Heterogeneity in Both Healthy People and ccRCC Patients.

Yiliang Meng, Kai Cai, Jingjie Zhao, Keyu Huang, Xiumei Ma, Jian Song, Yunguang Liu

Open access · goldAbstract read
In one paragraph

Article in Journal of immunology research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Exploring the role of CD8FEBS open bio · 2024
    Article
  5. Article
  6. Review
  7. Single-cell RNA sequencing for the study of kidney disease.Molecular medicine (Cambridge, Mass.) · 2023
    Review
  8. Article
  9. Article
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Yiliang MengDepartment of Oncology, People's Hospital of Baise, Baise City, Guangxi Province, China.ORCID https://orcid.org/0000-0001-7007-1830
Kai CaiRadiation Therapy Center, The First Affiliated Hospital of Guangxi University of Chinese Medicine, Guangxi Province, China.ORCID https://orcid.org/0000-0001-5397-8975
Jingjie ZhaoLife Science and Clinical Research Center, The Affiliated Hospital of Youjiang Medical University for Nationalities, Baise City, Guangxi Province, China.ORCID https://orcid.org/0000-0002-1582-2053
Keyu HuangDepartment of Hepatobiliary Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning City, Guangxi Province, China.ORCID https://orcid.org/0000-0002-8352-6133
Xiumei MaDepartment of Radiation Oncology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.ORCID https://orcid.org/0000-0002-6881-1534
Jian SongDepartment of Radiation Oncology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.ORCID https://orcid.org/0000-0002-2459-7046
Yunguang LiuDepartment of Pediatrics, The Affiliated Hospital of Youjiang Medical University for Nationalities, Baise City, Guangxi Province, China.ORCID https://orcid.org/0000-0001-5757-0803
Affiliated Hospital of Youjiang Medical University for Nationalities · CNShanghai Jiao Tong University · CNGuangxi Medical University · CNThe First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neutrophil is known to critically impact the development of renal diseases (e.g., the clear cell renal cell carcinoma (ccRCC)), whereas the heterogeneity of neutrophils in ccRCC remains unclear. In the present study, kidney biopsies from healthy donors and ccRCC tissues were collected for single-cell RNA sequencing (scRNA-seq). In addition, the subpopulations of neutrophils in a healthy kidney and in the tumor microenvironment (TME) of ccRCC were expressed and then analyzed. The genes reported previously were mapped to all subpopulations identified here. On that basis, biological theme comparison and Gene Set Enrichment Analysis (GSEA) were employed to reveal and compare relevant biological functions. In a healthy kidney, neutrophils exhibit two subpopulations: one is more associated with renal autoimmunity, probably acting as therapeutic target; the other is suggested to resist infectious microorganisms. It is noteworthy that six subpopulations were identified in ccRCC biopsy, and two were more relevant to autoimmunity, while the other four are more relevant to the tumor pathology. Besides, ccRCC neutrophil could resist anticancer immune therapies of ipilimumab and pembrolizumab for their low/no expressions of CTLA-4, PD-1, and PD-L1. Thus, this study can help understand the heterogeneity and pathological significance of neutrophils in renal diseases.

Indexed as

BiopsyCarcinoma, Renal CellCase-Control StudiesDatasets as TopicDrug ResistanceDrug Resistance, NeoplasmGene Expression Regulation, NeoplasticHealthy VolunteersHumansImmune Checkpoint InhibitorsKidneyKidney NeoplasmsNeutrophilsRNA-SeqSingle-Cell AnalysisTumor MicroenvironmentImmune Checkpoint Inhibitors

Identifiers

PMID33791390
PMCPMC7984911
OpenAlexW3136269664

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.