Evidence map›Paper›PMID 33790005›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

The nuclear to cytoplasmic ratio directly regulates zygotic transcription in

Sahla Syed, Henry Wilky, João Raimundo, Bomyi Lim, Amanda A Amodeo

Abstract readVideo-Audio Media
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Regulation of zygotic genome activation by the nucleocytoplasmic ratio.Frontiers in cell and developmental biology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Manipulation of Embryonic Cleavage Geometry Using Magnetic Tweezers.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  11. Article
  12. Review
  13. Review
  14. Principles of genome activation in the early embryo.Current opinion in genetics & development · 2023
    Review
  15. Article
  16. Regulation of organelle size and organization during development.Seminars in cell & developmental biology · 2023
    Review
  17. Origin, form and function of extraembryonic structures in teleost fishes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  18. Review
  19. Article
  20. Epigenome editing and epigenetic gene regulation in disease phenotypes.The Korean journal of chemical engineering · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sahla SyedDepartment of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-9917-0709
Henry WilkyLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544.
João RaimundoLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544.ORCID 0000-0002-8976-1898
Bomyi LimDepartment of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA 19104; bomyilim@seas.upenn.edu amanda.a.amodeo@dartmouth.edu.ORCID 0000-0002-3058-9181
Amanda A AmodeoLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544; bomyilim@seas.upenn.edu amanda.a.amodeo@dartmouth.edu.ORCID 0000-0003-3701-6375

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Design principles and dynamic gene control in embryonic developmentR35GM133425 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Bomyi Lim · 2019 to 2026
$2.9M
NIGMS NIH HHS R35 GM133425NIH HHS P40 OD018537
6 · The paper itself

Abstract

Early embryos must rapidly generate large numbers of cells to form an organism. Many species accomplish this through a series of rapid, reductive, and transcriptionally silent cleavage divisions. Previous work has demonstrated that the number of divisions before both cell cycle elongation and zygotic genome activation (ZGA) is regulated by the ratio of nuclear content to cytoplasm (N/C). To understand how the N/C ratio affects the timing of ZGA, we directly assayed the behavior of several previously identified N/C ratio-dependent genes using the MS2-MCP reporter system in living

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell CycleDrosophilaEmbryo, NonmammalianPloidiesRNA, MessengerZygoteRNA, Messengercell cyclemid-blastula transitionN/C ratiotranscriptionZGA

Identifiers

PMID33790005
PMCPMC8040668

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.