Evidence map›Paper›PMID 33789631›Full record

ArticleBMC biology2021

Loss of splicing factor IK impairs normal skeletal muscle development.

Hye In Ka, Hyemin Seo, Youngsook Choi, Joohee Kim, Mina Cho, Seok-Yong Choi, Sujeong Park, Sora Han, Jinsu An, Hak Suk Chung and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Hye In Ka *Department of Biological Sciences, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Hyemin Seo *Howard Hughes Medical Institute and Department of Molecular Biosciences, University of Texas at Austin, Austin, TX, 78712, USA.
Youngsook ChoiResearch Institute of Women's Health, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Joohee KimDepartment of Biological Sciences, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Mina ChoDepartment of Biological Sciences, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Seok-Yong ChoiDepartment of Biomedical Sciences, Chonnam National University Medical School, Hwasun, 58128, Republic of Korea.
Sujeong ParkDepartment of Biological Sciences, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Sora HanResearch Institute of Women's Health, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Jinsu AnCenter for Theragnosis, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.
Hak Suk ChungCenter for Theragnosis, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.
Young YangDepartment of Biological Sciences, Sookmyung Women's University, Seoul, 04310, Republic of Korea. yyang@sookmyung.ac.kr.ORCID http://orcid.org/0000-0003-4239-0804
Min Jung KimDepartment of Biological Sciences, Sookmyung Women's University, Seoul, 04310, Republic of Korea. minkim@sookmyung.ac.kr.
Sookmyung Women's University · KRBio-Medical Science (South Korea) · KRChonnam National University Hwasun Hospital · KRHoward Hughes Medical Institute · US

Funding

National Research Foundation of Korea 2016R1A5A1011974National Research Foundation of Korea 2017R1D1A1B03033153National Research Foundation of Korea 2020R1A2C2100985
6 · The paper itself

Abstract

backgroundIK is a splicing factor that promotes spliceosome activation and contributes to pre-mRNA splicing. Although the molecular mechanism of IK has been previously reported in vitro, the physiological role of IK has not been fully understood in any animal model. Here, we generate an ik knock-out (KO) zebrafish using the CRISPR/Cas9 system to investigate the physiological roles of IK in vivo.

resultsThe ik KO embryos display severe pleiotropic phenotypes, implying an essential role of IK in embryonic development in vertebrates. RNA-seq analysis reveals downregulation of genes involved in skeletal muscle differentiation in ik KO embryos, and there exist genes having improper pre-mRNA splicing among downregulated genes. The ik KO embryos display impaired neuromuscular junction (NMJ) and fast-twitch muscle development. Depletion of ik reduces myod1 expression and upregulates pax7a, preventing normal fast muscle development in a non-cell-autonomous manner. Moreover, when differentiation is induced in IK-depleted C2C12 myoblasts, myoblasts show a reduced ability to form myotubes. However, inhibition of IK does not influence either muscle cell proliferation or apoptosis in zebrafish and C2C12 cells.

conclusionThis study provides that the splicing factor IK contributes to normal skeletal muscle development in vivo and myogenic differentiation in vitro.

Indexed as

AnimalsAnimals, Genetically ModifiedCytokinesEmbryonic DevelopmentEmbryo, NonmammalianMuscle, SkeletalRNA Splicing FactorsZebrafishZebrafish ProteinsCytokinesRNA Splicing FactorsZebrafish ProteinsCRISPR/Cas9IKMyogenesisSkeletal musclesZebrafish

Identifiers

PMID33789631
PMCPMC8015194
OpenAlexW3142675825

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.