Evidence map›Paper›PMID 33789107›Full record

ArticleCell reports2021

Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons.

Jonathan J Ipsaro, Paul A O'Brien, Shibani Bhattacharya, Arthur G Palmer, Leemor Joshua-Tor

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Abundant piRNA production mediated by theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Developmental roles and molecular mechanisms of Asterix/GTSF1.Wiley interdisciplinary reviews. RNA · 2022
    Review
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jonathan J IpsaroHoward Hughes Medical Institute, W.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Paul A O'BrienDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 650 West 168th Street, New York, NY 10032, USA.
Shibani BhattacharyaNew York Structural Biology Center, 89 Convent Avenue, New York, NY 10027, USA.
Arthur G PalmerDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 650 West 168th Street, New York, NY 10032, USA.
Leemor Joshua-TorHoward Hughes Medical Institute, W.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA. Electronic address: leemor@cshl.edu.
Columbia University Irving Medical Center · USHoward Hughes Medical Institute · USNew York Structural Biology Center · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
DROSOPHILA GENOMICS RESOURCE CENTERP40OD010949 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Andrew Zelhof · 2012 to 2026
$9.4M
TR&D4: Integrated pipeline for data analysisP41GM118302 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI PALMER, ARTHUR G · 2017 to 2021
$8.5M
STRUCTURE AND DYNAMICS OF RIBONUCLEASE HR01GM050291 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PALMER, ARTHUR G · 1994 to 2017
$5.6M
TRAINING PROGRAM IN MOLECULAR BIOPHYSICST32GM008281 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PALMER, ARTHUR G · 1988 to 2017
$5.4M
Macromolecular dynamics and conformational changes in biological functionR35GM130398 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ARTHUR G PALMER · 2019 to 2026
$4.6M
Upgrade of 800 MHz SpectrometerS10OD016432 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI PALMER, ARTHUR G · 2014 to 2014
$600k
Upgrade of 600 MHz NMR spectrometerS10RR026540 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PALMER, ARTHUR G · 2010 to 2010
$495k
Structural Basis for RNA-induced Silencing via the Piwi Clade of ArgonautesF32GM097888 · NIGMS · COLD SPRING HARBOR LABORATORY · PI IPSARO, JONATHAN JAMES · 2011 to 2012
$101k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA045508NCRR NIH HHS S10 RR026540NIGMS NIH HHS F32 GM097888NIGMS NIH HHS P41 GM118302NIGMS NIH HHS R01 GM050291NIGMS NIH HHS R35 GM130398NIGMS NIH HHS T32 GM008281NIH HHS P40 OD010949NIH HHS S10 OD016432
6 · The paper itself

Abstract

The Piwi-interacting RNA (piRNA) pathway safeguards genomic integrity by silencing transposable elements (transposons) in the germline. While Piwi is the central piRNA factor, others including Asterix/Gtsf1 have also been demonstrated to be critical for effective silencing. Here, using enhanced crosslinking and immunoprecipitation (eCLIP) with a custom informatic pipeline, we show that Asterix/Gtsf1 specifically binds tRNAs in cellular contexts. We determined the structure of mouse Gtsf1 by NMR spectroscopy and identified the RNA-binding interface on the protein's first zinc finger, which was corroborated by biochemical analysis as well as cryo-EM structures of Gtsf1 in complex with co-purifying tRNA. Consistent with the known dependence of long terminal repeat (LTR) retrotransposons on tRNA primers, we demonstrate that LTR retrotransposons are, in fact, preferentially de-repressed in Asterix mutants. Together, these findings link Asterix/Gtsf1, tRNAs, and LTR retrotransposon silencing and suggest that Asterix exploits tRNA dependence to identify transposon transcripts and promote piRNA silencing.

Indexed as

Gene SilencingAnimalsDrosophila melanogasterDrosophila ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsProtein BindingRecombinant ProteinsRetroelementsRNA, Small InterferingRNA, TransferTerminal Repeat Sequencesarx protein, DrosophilaCue110 protein, mouseDrosophila ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsRecombinant ProteinsRetroelementsRNA, Small InterferingRNA, TransferAsterixcryoEMeCLIPGtsf1LTRNMRpiRNAretrotransposonRNAtRNA

Identifiers

PMID33789107
PMCPMC8283736
OpenAlexW3148607547

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.