Evidence map›Paper›PMID 33786997›Full record

ArticleEMBO reports2021

Immunity proteins of dual nuclease T6SS effectors function as transcriptional repressors.

Sunil Kumar Yadav, Ankita Magotra, Srayan Ghosh, Aiswarya Krishnan, Amrita Pradhan, Rahul Kumar, Joyati Das, Mamta Sharma, Gopaljee Jha

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in EMBO reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 41 citations in OpenAlex.

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  20. Bioinformatic Analysis of theFrontiers in microbiology · 2021
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Sunil Kumar YadavPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.
Ankita MagotraPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.
Srayan GhoshPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.
Aiswarya KrishnanPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.
Amrita PradhanPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.
Rahul KumarPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.
Joyati DasPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.
Mamta SharmaPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.
Gopaljee JhaPlant Microbe Interactions Laboratory, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, India.ORCID 0000-0002-3965-3135
National Institute of Plant Genome Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria utilize type VI secretion system (T6SS) to deliver antibacterial toxins to target co-habiting bacteria. Here, we report that Burkholderia gladioli strain NGJ1 deploys certain T6SS effectors (TseTBg), having both DNase and RNase activities to kill target bacteria. RNase activity is prominent on NGJ1 as well as other bacterial RNA while DNase activity is pertinent to only other bacteria. The associated immunity (TsiTBg) proteins harbor non-canonical helix-turn-helix motifs and demonstrate transcriptional repression activity, similar to the antitoxins of type II toxin-antitoxin (TA) systems. Genome analysis reveals that homologs of TseTBg are either encoded as TA or T6SS effectors in diverse bacteria. Our results indicate that a new ORF (encoding a hypothetical protein) has evolved as a result of operonic fusion of TA type TseTBg homolog with certain T6SS-related genes by the action of IS3 transposable elements. This has potentially led to the conversion of a TA into T6SS effector in Burkholderia. Our study exemplifies that bacteria can recruit toxins of TA systems as T6SS weapons to diversify its arsenal to dominate during inter-bacterial competitions.

Indexed as

Bacterial ProteinsType VI Secretion SystemsAnti-Bacterial AgentsBacteriaDeoxyribonucleasesAnti-Bacterial AgentsBacterial ProteinsDeoxyribonucleasesType VI Secretion SystemsDNA adenine methylaseeffector neutralizationLysR proteinsprotein-DNA interactionrestriction modification system

Identifiers

PMID33786997
PMCPMC8183406
OpenAlexW3152401000

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.