Evidence map›Paper›PMID 33786793›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Generation and Analysis of dsDNA Breaks for Checkpoint and Repair Studies in Fission Yeast.

Rohana Ramalingam, Matthew J O'Connell

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Rohana RamalingamDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Matthew J O'ConnellDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA. matthew.oconnell@mssm.edu.

Funding

Processing of lesions into DNA repair and checkpoint pathwaysR01GM124079 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI O'CONNELL, MATTHEW J · 2017 to 2023
$2.1M
NIGMS NIH HHS R01 GM124079
6 · The paper itself

Abstract

Damage to DNA elicits both checkpoint and repair responses. These are complex events that involve many genes whose products assemble at lesions and form signaling cascades to recruit additional factors and regulate the cell cycle. The fission yeast Schizosaccharomyces pombe has proven to be an excellent model to study these events, and has led gene and pathway discovery efforts. Recent progress has involved a more detailed analysis of the earliest events at lesions, particularly double-stranded DNA breaks (DSBs). Here we describe several methods for the analysis of events at DSBs, both on the DNA and the recruitment of proteins to these lesions, using S. pombe as a model. However, each of these methods is easily applicable to any experimental system with minor modifications to the protocols.

Indexed as

DNA Breaks, Double-StrandedRecombinational DNA RepairBlotting, SouthernBlotting, WesternCell CycleChromatin Immunoprecipitation SequencingMicrobiological TechniquesRad51 RecombinaseReal-Time Polymerase Chain ReactionSchizosaccharomycesSchizosaccharomyces pombe ProteinsRad51 RecombinaseRHP51 protein, S pombeSchizosaccharomyces pombe ProteinsDouble-stranded DNA break (DSB)End resectionImmunofluorescenceQuantitative PCR (qPCR)Schizosaccharomyces pombe

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.