Evidence map›Paper›PMID 33785802›Full record

ArticleScientific reports2021

Molecular organization of recombinant human-Arabidopsis chromosomes in hybrid cell lines.

Yikun Liu, Yeng Mun Liaw, Chee How Teo, Petr Cápal, Naoki Wada, Kiichi Fukui, Jaroslav Doležel, Nobuko Ohmido

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Yikun Liu *Graduate School of Human Development and Environment, Kobe University, Kobe, Hyogo, 657-8501, Japan.
Yeng Mun Liaw *Graduate School of Human Development and Environment, Kobe University, Kobe, Hyogo, 657-8501, Japan.
Chee How TeoCentre for Research in Biotechnology for Agriculture, Universiti Malaya, 50603, Lembah Pantai, Kuala Lumpur, Malaysia.
Petr CápalInstitute of Experimental Botany of the Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, 779 00, Olomouc, Czech Republic.
Naoki WadaGraduate School of Technology, Industrial and Social Sciences, Tokushima University, Tokushima, Tokushima, 770-8503, Japan.
Kiichi FukuiGraduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, 565-0871, Japan.
Jaroslav DoleželInstitute of Experimental Botany of the Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, 779 00, Olomouc, Czech Republic.
Nobuko OhmidoGraduate School of Human Development and Environment, Kobe University, Kobe, Hyogo, 657-8501, Japan. ohmido@kobe-u.ac.jp.
Kobe University · JPCzech Academy of Sciences, Institute of Experimental Botany · CZOsaka University · JPTokushima University · JPUniversity of Malaya · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although plants and animals are evolutionarily distant, the structure and function of their chromosomes are largely conserved. This allowed the establishment of a human-Arabidopsis hybrid cell line in which a neo-chromosome was formed by insertion of segments of Arabidopsis chromosomes into human chromosome 15. We used this unique system to investigate how the introgressed part of a plant genome was maintained in human genetic background. The analysis of the neo-chromosome in 60- and 300-day-old cell cultures by next-generation sequencing and molecular cytogenetics suggested its origin by fusion of DNA fragments of different sizes from Arabidopsis chromosomes 2, 3, 4, and 5, which were randomly intermingled rather than joined end-to-end. The neo-chromosome harbored Arabidopsis centromeric repeats and terminal human telomeres. Arabidopsis centromere wasn't found to be functional. Most of the introgressed Arabidopsis DNA was eliminated during the culture, and the Arabidopsis genome in 300-day-old culture showed significant variation in copy number as compared with the copy number variation in the 60-day-old culture. Amplified Arabidopsis centromere DNA and satellite repeats were localized at particular loci and some fragments were inserted into various positions of human chromosome. Neo-chromosome reorganization and behavior in somatic cell hybrids between the plant and animal kingdoms are discussed.

Indexed as

Genetic IntrogressionHybrid CellsArabidopsisCell Culture TechniquesCell LineChromosomes, ArtificialChromosomes, Human, Pair 15Chromosomes, PlantHumansWhole Genome Sequencing

Identifiers

PMID33785802
PMCPMC8009911
OpenAlexW3147426435

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.