Evidence map›Paper›PMID 33785781›Full record

ArticleScientific reports2021

Characterization of a novel mCH3 conjugated anti-PcrV scFv molecule.

Samira Komijani, Elham Bayat, Elham Rismani, Soma Hosseini, Reza Moazzami, Leila Nematollahi, Soroush Sardari, Yeganeh Talebkhan, Fatemeh Davami, Farzaneh Barkhordari and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Samira Komijani *Department of Biotechnology School of Biology, Alzahra University, Tehran, Iran.
Elham Bayat *Department of Molecular and Cellular Sciences, Faculty of Advanced Sciences & Technology, Tehran Medical Branch, Islamic Azad University, Tehran, Iran.
Elham RismaniMolecular Medicine Department, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Soma HosseiniBiotechnology Research Center, Pasteur Institute of Iran, No.358, 12 Farvardin St., 1316943551, Tehran, Iran.
Reza MoazzamiBiotechnology Research Center, Pasteur Institute of Iran, No.358, 12 Farvardin St., 1316943551, Tehran, Iran.
Leila NematollahiBiotechnology Research Center, Pasteur Institute of Iran, No.358, 12 Farvardin St., 1316943551, Tehran, Iran. Leila.nematollahi@pasteur.ac.ir.
Soroush SardariBiotechnology Research Center, Pasteur Institute of Iran, No.358, 12 Farvardin St., 1316943551, Tehran, Iran.
Yeganeh TalebkhanBiotechnology Research Center, Pasteur Institute of Iran, No.358, 12 Farvardin St., 1316943551, Tehran, Iran. talebkhan@pasteur.ac.ir.
Fatemeh DavamiBiotechnology Research Center, Pasteur Institute of Iran, No.358, 12 Farvardin St., 1316943551, Tehran, Iran. F_davami@pasteur.ac.ir.
Farzaneh BarkhordariBiotechnology Research Center, Pasteur Institute of Iran, No.358, 12 Farvardin St., 1316943551, Tehran, Iran.
Fakhrisadat HosseiniDepartment of Biotechnology School of Biology, Alzahra University, Tehran, Iran.
Hoda JahandarPharmaceutical Sciences Research Center, Tehran Medical Sciences, Islamic Azad University, Tehran, Iran.
Biotechnology Research Center · IRPasteur Institute of Iran · IRAlzahra University · IRIslamic Azad University Medical Branch of Tehran · IRIslamic Azad University, Tehran · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas aeruginosa (PA) is a leading cause of nosocomial infections and death in cystic fibrosis patients. The study was conducted to evaluate the physicochemical structure, biological activity and serum stability of a recombinant anti-PcrV single chain variable antibody fragment genetically attached to the mCH3cc domain. The stereochemical properties of scFv-mCH3 (YFL001) and scFv (YFL002) proteins as well as molecular interactions towards Pseudomonas aeruginosa PcrV were evaluated computationally. The subcloned fragments encoding YFL001 and YFL002 in pET28a were expressed within the E. coli BL21-DE3 strain. After Ni-NTA affinity chromatography, the biological activity of the proteins in inhibition of PA induced hemolysis as well as cellular cytotoxicity was assessed. In silico analysis revealed the satisfactory stereochemical quality of the models as well as common residues in their interface with PcrV. The structural differences of proteins through circular dichroism spectroscopy were confirmed by NMR analysis. Both proteins indicated inhibition of ExoU positive PA strains in hemolysis of red blood cells compared to ExoU negative strains as well as cytotoxicity effect on lung epithelial cells. The ELISA test showed the longer serum stability of the YFL001 molecule than YFL002. The results were encouraging to further evaluation of these two scFv molecules in animal models.

Indexed as

Anti-Bacterial AgentsAntigens, BacterialBacterial ToxinsCell Line, TumorCloning, MolecularComputer SimulationCross InfectionHalf-LifeHumansMolecular Docking SimulationPore Forming Cytotoxic ProteinsPseudomonas aeruginosaPseudomonas InfectionsRecombinant ProteinsSingle-Chain AntibodiesAnti-Bacterial AgentsAntigens, Bacterialantigen V, PseudomonasBacterial ToxinsPore Forming Cytotoxic ProteinsRecombinant ProteinsSingle-Chain Antibodies

Identifiers

PMID33785781
PMCPMC8010009
OpenAlexW3150120123

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.