Evidence map›Paper›PMID 33785742›Full record

ArticleNature communications2021

Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments.

Handuo Shi, Yan Hu, Pascal D Odermatt, Carlos G Gonzalez, Lichao Zhang, Joshua E Elias, Fred Chang, Kerwyn Casey Huang

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. International journal of molecular sciences · 2025
    Article
  3. Article
  4. Article
  5. Article
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  15. Article
  16. Article
  17. Phenotypic and metabolic adaptations ofFrontiers in microbiology · 2023
    Article
  18. Article
  19. Review
  20. Feedback linking cell envelope stiffness, curvature, and synthesis enables robust rod-shaped bacterial growth.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Handuo ShiDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1688-6905
Yan HuDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Pascal D OdermattDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1307-1364
Carlos G GonzalezDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, USA.
Lichao ZhangChan Zuckerberg Biohub, Stanford, CA, USA.ORCID 0000-0003-1811-7568
Joshua E EliasChan Zuckerberg Biohub, Stanford, CA, USA.
Fred ChangDepartment of Cell and Tissue Biology, University of California, San Francisco, San Francisco, CA, USA.
Kerwyn Casey HuangDepartment of Bioengineering, Stanford University, Stanford, CA, USA. kchuang@stanford.edu.ORCID 0000-0002-8043-8138

Funding

ASSEMBLY AND PLACEMENT OF THE CELL DIVISION RINGR01GM056836 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHANG, FRED · 1998 to 2018
$7.4M
Engineering of cell shape and intracellular organizationDP2OD006466 · OD · STANFORD UNIVERSITY · PI HUANG, KERWYN C. · 2009 to 2009
$2.4M
NIGMS NIH HHS R01 GM056836NIH HHS DP2 OD006466
6 · The paper itself

Abstract

The steady-state size of bacterial cells correlates with nutrient-determined growth rate. Here, we explore how rod-shaped bacterial cells regulate their morphology during rapid environmental changes. We quantify cellular dimensions throughout passage cycles of stationary-phase cells diluted into fresh medium and grown back to saturation. We find that cells exhibit characteristic dynamics in surface area to volume ratio (SA/V), which are conserved across genetic and chemical perturbations as well as across species and growth temperatures. A mathematical model with a single fitting parameter (the time delay between surface and volume synthesis) is quantitatively consistent with our SA/V experimental observations. The model supports that this time delay is due to differential expression of volume and surface-related genes, and that the first division after dilution occurs at a tightly controlled SA/V. Our minimal model thus provides insight into the connections between bacterial growth rate and cell shape in dynamic environments.

Indexed as

Gene Expression Regulation, BacterialAlgorithmsBacteriaBacterial ProteinsCell DivisionEscherichia coliGene Expression ProfilingKineticsModels, TheoreticalProteomicsSurface PropertiesBacterial Proteins

Identifiers

PMID33785742
PMCPMC8009875

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.