Evidence map›Paper›PMID 33785624›Full record

ArticlemBio2021

Cooperation between Different CRISPR-Cas Types Enables Adaptation in an RNA-Targeting System.

Ville Hoikkala, Janne Ravantti, César Díez-Villaseñor, Marja Tiirola, Rachel A Conrad, Mark J McBride, Sylvain Moineau, Lotta-Riina Sundberg

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Ville HoikkalaUniversity of Jyväskylä Department of Biological and Environmental Science, Nanoscience Center, Jyväskylä, Finland.ORCID 0000-0003-3995-3215
Janne RavanttiUniversity of Helsinki, Molecular and Integrative Biosciences Research Programme, Helsinki, Finland.ORCID 0000-0002-8578-7230
César Díez-VillaseñorUniversity of Jyväskylä Department of Biological and Environmental Science, Nanoscience Center, Jyväskylä, Finland.
Marja TiirolaUniversity of Jyväskylä Department of Biological and Environmental Science, Nanoscience Center, Jyväskylä, Finland.
Rachel A ConradUniversity of Wisconsin-Milwaukee, Department of Biological Sciences, Milwaukee, Wisconsin, USA.
Mark J McBrideUniversity of Wisconsin-Milwaukee, Department of Biological Sciences, Milwaukee, Wisconsin, USA.ORCID 0000-0002-3798-6761
Sylvain MoineauUniversité Laval, Département de Biochimie, de Microbiologie, et de Bio-informatique, Québec City, Québec, Canada.ORCID 0000-0002-2832-5101
Lotta-Riina SundbergUniversity of Jyväskylä Department of Biological and Environmental Science, Nanoscience Center, Jyväskylä, Finland lotta-riina.sundberg@jyu.fi.ORCID 0000-0003-3510-4398
University of Jyväskylä · FIUniversity of Wisconsin–Milwaukee · USUniversité Laval · CAUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR-Cas immune systems adapt to new threats by acquiring new spacers from invading nucleic acids such as phage genomes. However, some CRISPR-Cas loci lack genes necessary for spacer acquisition despite variation in spacer content between microbial strains. It has been suggested that such loci may use acquisition machinery from cooccurring CRISPR-Cas systems within the same strain. Here, following infection by a virulent phage with a double-stranded DNA (dsDNA) genome, we observed spacer acquisition in the native host

Indexed as

CRISPR-Cas SystemsAdaptation, PhysiologicalBacteriophagesClustered Regularly Interspaced Short Palindromic RepeatsFlavobacteriumGenome, BacterialRNA, ViralRNA, ViraladaptationbacteriophagescoevolutionCRISPRspacer acquisitiontype IItype VI

Identifiers

PMID33785624
PMCPMC8092290
OpenAlexW3149158769

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.