Evidence map›Paper›PMID 33785359›Full record

ArticleThe Journal of biological chemistry

Biophysical analysis of the plant-specific GIPC sphingolipids reveals multiple modes of membrane regulation.

Adiilah Mamode Cassim, Yotam Navon, Yu Gao, Marion Decossas, Laetitia Fouillen, Axelle Grélard, Minoru Nagano, Olivier Lambert, Delphine Bahammou, Pierre Van Delft and 9 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Lipid Rafts and Plant Gravisensitivity.Life (Basel, Switzerland) · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Diversity in sphingolipid metabolism across land plants.Journal of experimental botany · 2022
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 4 countries.

Adiilah Mamode CassimLaboratoire de Biogènese Membranaire, UMR 5200, CNRS, Université de Bordeaux, Villenave d'Ornon Cedex, France.
Yotam NavonCentre de Recherches sur les Macromolécules Végétales (CERMAV), Univ. Grenoble Alpes, CNRS, Grenoble, France.
Yu GaoJoint BioEnergy Institute, Emeryville, California, USA; Environmental and Systems Genomics, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Marion DecossasInstitute of Chemistry & Biology of Membranes & Nanoobjects (UMR5248 CBMN), CNRS, Univ. Bordeaux, Institut Polytechnique Bordeaux, All. Geoffroy Saint-Hilaire, Pessac, France.
Laetitia FouillenLaboratoire de Biogènese Membranaire, UMR 5200, CNRS, Université de Bordeaux, Villenave d'Ornon Cedex, France.
Axelle GrélardInstitute of Chemistry & Biology of Membranes & Nanoobjects (UMR5248 CBMN), CNRS, Univ. Bordeaux, Institut Polytechnique Bordeaux, All. Geoffroy Saint-Hilaire, Pessac, France.
Minoru NaganoLaboratoire de Biogènese Membranaire, UMR 5200, CNRS, Université de Bordeaux, Villenave d'Ornon Cedex, France; College of Life Sciences, Ritsumeikan University, Kusatsu, Japan.
Olivier LambertInstitute of Chemistry & Biology of Membranes & Nanoobjects (UMR5248 CBMN), CNRS, Univ. Bordeaux, Institut Polytechnique Bordeaux, All. Geoffroy Saint-Hilaire, Pessac, France.
Delphine BahammouLaboratoire de Biogènese Membranaire, UMR 5200, CNRS, Université de Bordeaux, Villenave d'Ornon Cedex, France.
Pierre Van DelftLaboratoire de Biogènese Membranaire, UMR 5200, CNRS, Université de Bordeaux, Villenave d'Ornon Cedex, France.
Lilly Maneta-PeyretLaboratoire de Biogènese Membranaire, UMR 5200, CNRS, Université de Bordeaux, Villenave d'Ornon Cedex, France.
Françoise Simon-PlasAgroécologie, AgroSup Dijon, CNRS, INRA, Univ. Bourgogne Franche-Comté, Dijon, France.
Laurent HeuxCentre de Recherches sur les Macromolécules Végétales (CERMAV), Univ. Grenoble Alpes, CNRS, Grenoble, France.
Bruno JeanCentre de Recherches sur les Macromolécules Végétales (CERMAV), Univ. Grenoble Alpes, CNRS, Grenoble, France.
Giovanna FragnetoInstitut Laue-Langevin ILL, Grenoble, France.
Jenny C MortimerJoint BioEnergy Institute, Emeryville, California, USA; Environmental and Systems Genomics, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Magali DeleuLaboratoire de Biophysique Moléculaire aux Interfaces, TERRA Research Centre, GX ABT, Université de Liège, Gembloux, Belgium.
Laurence LinsLaboratoire de Biophysique Moléculaire aux Interfaces, TERRA Research Centre, GX ABT, Université de Liège, Gembloux, Belgium.
Sébastien MongrandLaboratoire de Biogènese Membranaire, UMR 5200, CNRS, Université de Bordeaux, Villenave d'Ornon Cedex, France. Electronic address: sebastien.mongrand@u-bordeaux.fr.
Centre National de la Recherche Scientifique · FRLawrence Berkeley National Laboratory · USUniversity of Liège · BEInstitut Laue-Langevin · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant plasma membrane (PM) is an essential barrier between the cell and the external environment, controlling signal perception and transmission. It consists of an asymmetrical lipid bilayer made up of three different lipid classes: sphingolipids, sterols, and phospholipids. The glycosyl inositol phosphoryl ceramides (GIPCs), representing up to 40% of total sphingolipids, are assumed to be almost exclusively in the outer leaflet of the PM. However, their biological role and properties are poorly defined. In this study, we investigated the role of GIPCs in membrane organization. Because GIPCs are not commercially available, we developed a protocol to extract and isolate GIPC-enriched fractions from eudicots (cauliflower and tobacco) and monocots (leek and rice). Lipidomic analysis confirmed the presence of trihydroxylated long chain bases and 2-hydroxylated very long-chain fatty acids up to 26 carbon atoms. The glycan head groups of the GIPCs from monocots and dicots were analyzed by gas chromatograph-mass spectrometry, revealing different sugar moieties. Multiple biophysics tools, namely Langmuir monolayer, ζ-Potential, light scattering, neutron reflectivity, solid state 2H-NMR, and molecular modeling, were used to investigate the physical properties of the GIPCs, as well as their interaction with free and conjugated phytosterols. We showed that GIPCs increase the thickness and electronegativity of model membranes, interact differentially with the different phytosterols species, and regulate the gel-to-fluid phase transition during temperature variations. These results unveil the multiple roles played by GIPCs in the plant PM.

Indexed as

BiophysicsCell MembranePlantsPolysaccharidesSpecies SpecificitySphingolipidsPolysaccharidesSphingolipidscryo-EMGIPCLangmuir monolayermodelingneutron reflectivityphytosterolplasma membranesolid-state NMRsphingolipidsζ-potential

Identifiers

PMID33785359
PMCPMC8099651
OpenAlexW3151870888

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.