Evidence map›Paper›PMID 33783355›Full record

ArticleeLife2021

Uncovering a novel function of the CCR4-NOT complex in phytochrome A-mediated light signalling in plants.

Philipp Schwenk, David J Sheerin, Jathish Ponnu, Anne-Marie Staudt, Klara L Lesch, Elisabeth Lichtenberg, Katalin F Medzihradszky, Ute Hoecker, Eva Klement, András Viczián and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  12. EID1 promotes the response to canopy shade inmicroPublication biology · 2023
    Article
  13. SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Philipp SchwenkInstitute of Biology II, Faculty of Biology, University of Freiburg, Freiburg, Germany.
David J SheerinInstitute of Biology II, Faculty of Biology, University of Freiburg, Freiburg, Germany.
Jathish PonnuInstitute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, Germany.ORCID 0000-0002-3276-7068
Anne-Marie StaudtInstitute of Biology II, Faculty of Biology, University of Freiburg, Freiburg, Germany.
Klara L LeschInstitute of Biology II, Faculty of Biology, University of Freiburg, Freiburg, Germany.
Elisabeth LichtenbergInstitute of Biology II, Faculty of Biology, University of Freiburg, Freiburg, Germany.
Katalin F MedzihradszkyLaboratory of Proteomics Research, Biological Research Centre, Szeged, Hungary.
Ute HoeckerInstitute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, Germany.
Eva KlementLaboratory of Proteomics Research, Biological Research Centre, Szeged, Hungary.
András VicziánInstitute of Plant Biology, Biological Research Centre, Szeged, Hungary.ORCID 0000-0003-2055-3430
Andreas HiltbrunnerInstitute of Biology II, Faculty of Biology, University of Freiburg, Freiburg, Germany.ORCID 0000-0003-0438-5297
University of Freiburg · DEHUN-REN Szegedi Biológiai Kutatóközpont · HUUniversity of Cologne · DE

Funding

Deutsche Forschungsgemeinschaft EXC-2189Deutsche Forschungsgemeinschaft EXC-294Deutsche Forschungsgemeinschaft GSC-4Deutsche Forschungsgemeinschaft HI 1369/10-1Deutsche Forschungsgemeinschaft HO 2793-3Economic Development and Innovation Operative Program GINOP-2.3.2-15-2016-00001Economic Development and Innovation Operative Program GINOP-2.3.2-15-2016-00015Economic Development and Innovation Operative Program GINOP-2.3.2-15-2016-00032Fonds National de la Recherche Luxembourg 14546015Hungarian Scientific Research Fund K-132633
6 · The paper itself

Abstract

Phytochromes are photoreceptors regulating growth and development in plants. Using the model plant Arabidopsis, we identified a novel signalling pathway downstream of the far-red light-sensing phytochrome, phyA, that depends on the highly conserved CCR4-NOT complex. CCR4-NOT is integral to RNA metabolism in yeast and animals, but its function in plants is largely unknown. NOT9B, an Arabidopsis homologue of human CNOT9, is a component of the CCR4-NOT complex, and acts as negative regulator of phyA-specific light signalling when bound to NOT1, the scaffold protein of the complex. Light-activated phyA interacts with and displaces NOT9B from NOT1, suggesting a potential mechanism for light signalling through CCR4-NOT. ARGONAUTE 1 and proteins involved in splicing associate with NOT9B and we show that NOT9B is required for specific phyA-dependent alternative splicing events. Furthermore, association with nuclear localised ARGONAUTE 1 raises the possibility that NOT9B and CCR4-NOT are involved in phyA-modulated gene expression.

Indexed as

LightSignal TransductionArabidopsisArabidopsis ProteinsGene ExpressionMultigene FamilyPhytochrome AArabidopsis ProteinsPhytochrome AA. thalianaCCR4-NOT complexlight signallingphotomorphogenesisphytochromeplant biology

Identifiers

PMID33783355
PMCPMC8009681
OpenAlexW3144260857

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.