Evidence map›Paper›PMID 33782402›Full record

ArticleNature communications2021

Expanding the scope of plant genome engineering with Cas12a orthologs and highly multiplexable editing systems.

Yingxiao Zhang, Qiurong Ren, Xu Tang, Shishi Liu, Aimee A Malzahn, Jianping Zhou, Jiaheng Wang, Desuo Yin, Changtian Pan, Mingzhu Yuan and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 188 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Molecular mechanisms and biotechnology applications of CRISPR-Cas12a.Nature reviews. Molecular cell biology · 2026
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. CRISPR/Cas Genome Editing and Its Applications in Cereal Crop Improvement.Plant-environment interactions (Hoboken, N.J.) · 2026
    Review
  17. Article
  18. Article
  19. Review
  20. Article

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 2 countries.

Yingxiao Zhang *Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Qiurong Ren *Department of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Xu Tang *Department of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Shishi LiuDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Aimee A MalzahnDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Jianping ZhouDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Jiaheng WangDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Desuo YinDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Changtian PanDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.ORCID 0000-0002-5852-059X
Mingzhu YuanDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Lan HuangDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Han YangDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Yuxin ZhaoDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Qing FangDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Xuelian ZhengDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.ORCID 0000-0002-7475-7888
Li TianDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Yanhao ChengDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Ysa LeDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Bailey McCoyDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Lidiya FranklinDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Jeremy D SelengutCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA.
Stephen M MountDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA.ORCID 0000-0003-2748-8205
Qiudeng QueSyngenta, Research Triangle Park, NC, USA.
Yong ZhangDepartment of Biotechnology, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China. zhangyong916@uestc.edu.cn.ORCID 0000-0003-3704-4835
Yiping QiDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA. yiping@umd.edu.ORCID 0000-0002-9556-6706
University of Electronic Science and Technology of China · CNUniversity of Maryland, College Park · USHubei Academy of Agricultural Sciences · CNNanjing Agricultural University · CNTriangle · USUniversity of Maryland, Baltimore · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR-Cas12a is a promising genome editing system for targeting AT-rich genomic regions. Comprehensive genome engineering requires simultaneous targeting of multiple genes at defined locations. Here, to expand the targeting scope of Cas12a, we screen nine Cas12a orthologs that have not been demonstrated in plants, and identify six, ErCas12a, Lb5Cas12a, BsCas12a, Mb2Cas12a, TsCas12a and MbCas12a, that possess high editing activity in rice. Among them, Mb2Cas12a stands out with high editing efficiency and tolerance to low temperature. An engineered Mb2Cas12a-RVRR variant enables editing with more relaxed PAM requirements in rice, yielding two times higher genome coverage than the wild type SpCas9. To enable large-scale genome engineering, we compare 12 multiplexed Cas12a systems and identify a potent system that exhibits nearly 100% biallelic editing efficiency with the ability to target as many as 16 sites in rice. This is the highest level of multiplex edits in plants to date using Cas12a. Two compact single transcript unit CRISPR-Cas12a interference systems are also developed for multi-gene repression in rice and Arabidopsis. This study greatly expands the targeting scope of Cas12a for crop genome engineering.

Indexed as

CRISPR-Cas SystemsGenome, PlantAgrobacterium tumefaciensAllelesArabidopsisBacterial ProteinsBase SequenceClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated Protein 9CRISPR-Associated ProteinsCrops, AgriculturalEndodeoxyribonucleasesGene EditingGenetic EngineeringHumansIsoenzymesBacterial ProteinsCas12a proteinCRISPR-Associated Protein 9CRISPR-Associated ProteinsEndodeoxyribonucleasesIsoenzymesRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID33782402
PMCPMC8007695
OpenAlexW3151488504

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.