Evidence map›Paper›PMID 33781765›Full record

ArticleBiophysical journal2021

Determination of the molecular reach of the protein tyrosine phosphatase SHP-1.

Lara Clemens, Mikhail Kutuzov, Kristina Viktoria Bayer, Jesse Goyette, Jun Allard, Omer Dushek

Open access · hybridAbstract read
In one paragraph

Article in Biophysical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  8. Dephosphorylation accelerates the dissociation of ZAP70 from the T cell receptor.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Lara ClemensCenter for Complex Biological Systems, University of California Irvine, Irvine, California.
Mikhail KutuzovSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
Kristina Viktoria BayerSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
Jesse GoyetteEMBL Australia Node in Single Molecule Science, School of Medical Sciences University of New South Wales, Sydney, Australia; ARC Centre of Excellence in Advanced Molecular Imaging, University of New South Wales, Sydney, Australia.
Jun AllardCenter for Complex Biological Systems, University of California Irvine, Irvine, California. Electronic address: jun.allard@uci.edu.
Omer DushekSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom. Electronic address: omer.dushek@path.ox.ac.uk.
University of Oxford · GBUniversity of California, Irvine · USUNSW Sydney · AU

Funding

Wellcome TrustWellcome Trust 207537/Z/17/Z
6 · The paper itself

Abstract

Immune receptors signal by recruiting (or tethering) enzymes to their cytoplasmic tails to catalyze reactions on substrates within reach. This is the case for the phosphatase SHP-1, which, upon tethering to inhibitory receptors, dephosphorylates diverse substrates to control T cell activation. Precisely how tethering regulates SHP-1 activity is incompletely understood. Here, we measure binding, catalysis, and molecular reach for tethered SHP-1 reactions. We determine the molecular reach of SHP-1 to be 13.0 nm, which is longer than the estimate from the allosterically active structure (5.3 nm), suggesting that SHP-1 can achieve a longer reach by exploring multiple active conformations. Using modeling, we show that when uniformly distributed, receptor-SHP-1 complexes can only reach 15% of substrates, but this increases to 90% when they are coclustered. When within reach, we show that membrane recruitment increases the activity of SHP-1 by a 1000-fold increase in local concentration. The work highlights how molecular reach regulates the activity of membrane-recruited SHP-1 with insights applicable to other membrane-tethered reactions.

Indexed as

Protein Tyrosine Phosphatase, Non-Receptor Type 11TyrosinePhosphorylationProtein Phosphatase 1Protein Tyrosine Phosphatase, Non-Receptor Type 6SH2 Domain-Containing Protein Tyrosine PhosphatasesProtein Phosphatase 1Protein Tyrosine Phosphatase, Non-Receptor Type 11Protein Tyrosine Phosphatase, Non-Receptor Type 6PTPN6 protein, humanSH2 Domain-Containing Protein Tyrosine PhosphatasesTyrosine

Identifiers

PMID33781765
PMCPMC8204385
OpenAlexW3143785739

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.