Evidence map›Paper›PMID 33781281›Full record

ArticlePlant methods2021

Isotope ratio-based quantification of carbon assimilation highlights the role of plastidial isoprenoid precursor availability in photosynthesis.

Matthew E Bergman, Diego González-Cabanelas, Louwrance P Wright, Berkley J Walker, Michael A Phillips

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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  4. Combination of long-termPlant methods · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Matthew E BergmanDepartment of Cell and Systems Biology, University of Toronto, Toronto, ON, M5S 3G5, Canada.ORCID http://orcid.org/0000-0002-4071-3166
Diego González-CabanelasDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, 07745, Jena, Germany.ORCID http://orcid.org/0000-0003-3963-7204
Louwrance P WrightZeiselhof Research Farm, Menlo Park, P.O. Box 35984, Pretoria, 0102, South Africa.
Berkley J WalkerDepartment of Energy, Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA.ORCID http://orcid.org/0000-0001-5932-6468
Michael A PhillipsDepartment of Cell and Systems Biology, University of Toronto, Toronto, ON, M5S 3G5, Canada. michaelandrew.phillips@utoronto.ca.ORCID http://orcid.org/0000-0001-7276-119X
Max Planck Institute for Chemical Ecology · DEMichigan State University · USSt. Michael's Hospital · CAUniversity of Toronto · CA

Funding

Chemical Sciences, Geosciences, and Biosciences Division DE-FG02-91ER20021Natural Sciences and Engineering Research Council of Canada RGPIN-2017-06400
6 · The paper itself

Abstract

backgroundWe report a method to estimate carbon assimilation based on isotope ratio-mass spectrometry (IRMS) of

resultsIRMS-based carbon assimilation values from plants labeled at different light intensities were compared to those obtained by gas exchange, and the two methods yielded similar values. Using this method, we observed a strong correlation between

conclusionsThis method provides an alternative to gas exchange that offers several advantages: resilience to differences in leaf overlap, measurements based on tissue mass rather than leaf surface area, and compatibility with mutant Arabidopsis lines which are not amenable to gas exchange measurements due to low biomass and limited leaf surface area. It is suitable for screening large numbers of replicates simultaneously as well as post-hoc analysis of previously labeled plant tissue and is complementary to downstream detection of isotopic label in targeted metabolite pools.

Indexed as

2C-methyl-D-erythritol 4-phosphate pathwayArabidopsis thalianaClomazoneFosmidomycinIsoprenoid metabolismIsotope ratio mass spectrometryPhotosynthetic carbon assimilationStable isotope labeling

Identifiers

PMID33781281
PMCPMC8008545
OpenAlexW3142885314

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.