Evidence map›Paper›PMID 33779863›Full record

ArticleThe European physical journal. E, Soft matter2021

Comparison of explicit and mean-field models of cytoskeletal filaments with crosslinking motors.

Adam R Lamson, Jeffrey M Moore, Fang Fang, Matthew A Glaser, Michael J Shelley, Meredith D Betterton

Abstract readComparative Study
In one paragraph

Article in The European physical journal. E, Soft matter, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Adam R LamsonDepartment of Physics, University of Colorado Boulder, Boulder, USA. alamson@flatironinstitute.org.ORCID http://orcid.org/0000-0003-2616-2801
Jeffrey M MooreDepartment of Physics, University of Colorado Boulder, Boulder, USA.
Fang FangCourant Institute, New York University, New York, USA.
Matthew A GlaserDepartment of Physics, University of Colorado Boulder, Boulder, USA.
Michael J ShelleyCourant Institute, New York University, New York, USA.
Meredith D BettertonDepartment of Physics, University of Colorado Boulder, Boulder, USA.

Funding

Mechanisms of Kinesin-5 Motors in Mitotic Spindle AssemblyR01GM124371 · NIGMS · UNIVERSITY OF COLORADO · PI BETTERTON, MEREDITH · 2018 to 2021
$1.3M
National Institutes of Health (US) R01GM124371National Science Foundation ACI-1532236National Science Foundation DMR-1725065National Science Foundation (US) ACI-1532235National Science Foundation (US) DMR-1420073National Science Foundation (US) DMR-1420736National Science Foundation (US) DMS-1463962National Science Foundation (US) DMS-1620003NIGMS NIH HHS R01 GM124371
6 · The paper itself

Abstract

In cells, cytoskeletal filament networks are responsible for cell movement, growth, and division. Filaments in the cytoskeleton are driven and organized by crosslinking molecular motors. In reconstituted cytoskeletal systems, motor activity is responsible for far-from-equilibrium phenomena such as active stress, self-organized flow, and spontaneous nematic defect generation. How microscopic interactions between motors and filaments lead to larger-scale dynamics remains incompletely understood. To build from motor-filament interactions to predict bulk behavior of cytoskeletal systems, more computationally efficient techniques for modeling motor-filament interactions are needed. Here, we derive a coarse-graining hierarchy of explicit and continuum models for crosslinking motors that bind to and walk on filament pairs. We compare the steady-state motor distribution and motor-induced filament motion for the different models and analyze their computational cost. All three models agree well in the limit of fast motor binding kinetics. Evolving a truncated moment expansion of motor density speeds the computation by [Formula: see text]-[Formula: see text] compared to the explicit or continuous-density simulations, suggesting an approach for more efficient simulation of large networks. These tools facilitate further study of motor-filament networks on micrometer to millimeter length scales.

Indexed as

CytoskeletonMolecular Motor ProteinsKineticsModels, BiologicalMolecular Motor Proteins

Identifiers

PMID33779863
PMCPMC8220871

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.