Evidence map›Paper›PMID 33779485›Full record

ArticleCell cycle (Georgetown, Tex.)2021

IL-8, MSPa, MIF, FGF-9, ANG-2 and AgRP collection were identified for the diagnosis of colorectal cancer based on the support vector machine model.

Mingfu Cui, Yanan Zhao, Zuocong Zhang, Yang Zhao, Songyun Han, Ruijie Wang, Dayong Ding, Xuedong Fang

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Mingfu CuiDepartment of Gastrointestinal and Colorectal Surgery, China-Japan Union Hospital, Jilin University, Changchun, Jilin Province, China.
Yanan ZhaoDepartment of Oncology and Hematology Surgery, China-Japan Union Hospital, Changchun, Jilin Province, China.
Zuocong ZhangDepartment of Colorectal Surgery, Jilin Province People's Hospital, Changchun, Jilin Province, China.
Yang ZhaoAnorectal Surgery, Siping Central People's Hospital, Jilin University, Siping, Jilin Province, China.
Songyun HanEmergency Department, Tonghua Central Hospital, Jilin University, Tonghua, Jilin Province, China.
Ruijie WangDepartment of Gastrointestinal Surgery, Shengli Oilfield Central Hospital, Dongying, Jilin Province, China.
Dayong DingDepartment of Gastrointestinal and Colorectal Surgery, China-Japan Union Hospital, Jilin University, Changchun, Jilin Province, China.
Xuedong FangDepartment of Gastrointestinal and Colorectal Surgery, China-Japan Union Hospital, Jilin University, Changchun, Jilin Province, China.
Jilin University · CNUnion Hospital · CNPeople 's Hospital of Jilin Province · CNShengli Oilfield Central Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Colorectal cancer (CRC) is one of the most common cancer, and the early detection of CRC is essential to improve the survival rate of patients. To identify diagnostic markers for colorectal cancer (CRC) by screening differentially expressed proteins (DEPs) in CRC. The DEPs were initially obtained from 12 CRC samples and 12 healthy control samples, and verification analysis was performed in another 34 CRC samples and 34 normal controls. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment with DEPs was analyzed by the R package clusterProfiler (Version 3.2.11), and the DEP-associated protein-protein interaction (PPI) network was created from the STRING database. Additionally, Support Vector Machine (SVM) model prediction and survival analyses were conducted on the key DEPs. Preliminary screening and functional analysis showed that the DEPs mainly overrepresented in pathways such as cytokine-cytokine receptor interaction, chemokine signaling pathway, Rap1, Ras, and MAPK signaling pathways. The key DEPs, including AgRP, ANG-2, Dtk, EOT3, FGF-4, FGF-9, HCC-4, IL-16, IL-8, MIF, MSPa, TECK, TPO, TRAIL R3, and VEGF-D, were used to construct a custom chip. The drug-gene interaction network suggested that TPO was a key drug target. ROC curve showed the SVM diagnostic model with the DEPs IL-8, MSPa, MIF, FGF-9, ANG-2, and AgRP had better diagnostic performance with an AUC of 0.933. Survival analysis showed the expression of FGF9, TPO, TRAIL R3, Dtk, TECK and FGF4 were associated with prognosis. This study revealed the important serum proteins in the pathogenesis of CRC, which might serve as useful and noninvasive predictors for the diagnosis of CRC.

Indexed as

Support Vector MachineAgedAgouti-Related ProteinBiomarkers, TumorColorectal NeoplasmsDatabases, GeneticFemaleFibroblast Growth Factor 9HumansInterleukin-8Intramolecular OxidoreductasesMacrophage Migration-Inhibitory FactorsMaleMiddle AgedVesicular Transport ProteinsAgouti-Related ProteinAGRP protein, humanBiomarkers, TumorFGF9 protein, humanFibroblast Growth Factor 9Interleukin-8Intramolecular OxidoreductasesMacrophage Migration-Inhibitory FactorsMIF protein, humanVesicular Transport ProteinsVPS51 protein, humanColorectal cancerdiagnosisdifferentially expressed proteinssvm model prediction

Identifiers

PMID33779485
PMCPMC8098075
OpenAlexW3143897378

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.