Evidence map›Paper›PMID 33772750›Full record

ArticleAmerican journal of physical anthropology2021

Skin deep: The decoupling of genetic admixture levels from phenotypes that differed between source populations.

Jaehee Kim, Michael D Edge, Amy Goldberg, Noah A Rosenberg

Abstract read
In one paragraph

Article in American journal of physical anthropology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. A Macaque Model for the Effects of Hybridization on Body Size.American journal of biological anthropology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Human genetic admixture through the lens of population genomics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jaehee KimDepartment of Biology, Stanford University, Stanford, California, USA.ORCID 0000-0002-5210-2004
Michael D EdgeDepartment of Biological Sciences, University of Southern California, Los Angeles, California, USA.
Amy GoldbergDepartment of Evolutionary Anthropology, Duke University, Durham, North Carolina, USA.
Noah A RosenbergDepartment of Biology, Stanford University, Stanford, California, USA.ORCID 0000-0002-1829-8664

Funding

Population genetics for large-scale sequencing studies of diverse populationsR01HG005855 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Noah Rosenberg, Paul A Scheet · 2010 to 2026
$5.8M
Inferring the evolutionary history of admixed populationsR35GM133481 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Amy Goldberg · 2019 to 2026
$2.8M
Reconstructing the history of polygenic adaptation using ancestral recombimation graphsF32GM130050 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI EDGE, MICHAEL DONALD · 2018 to 2020
$101k
NHGRI NIH HHS R01 HG005855NIGMS NIH HHS F32 GM130050NIGMS NIH HHS GM130050NIGMS NIH HHS R35 GM133481
6 · The paper itself

Abstract

objectivesIn genetic admixture processes, source groups for an admixed population possess distinct patterns of genotype and phenotype at the onset of admixture. Particularly in the context of recent and ongoing admixture, such differences are sometimes taken to serve as markers of ancestry for individuals-that is, phenotypes initially associated with the ancestral background in one source population are assumed to continue to reflect ancestry in that population. Such phenotypes might possess ongoing significance in social categorizations of individuals, owing in part to perceived continuing correlations with ancestry. However, genotypes or phenotypes initially associated with ancestry in one specific source population have been seen to decouple from overall admixture levels, so that they no longer serve as proxies for genetic ancestry. Here, we aim to develop an understanding of the joint dynamics of admixture levels and phenotype distributions in an admixed population.

methodsWe devise a mechanistic model, consisting of an admixture model, a quantitative trait model, and a mating model. We analyze the behavior of the mechanistic model in relation to the model parameters.

resultsWe find that it is possible for the decoupling of genetic ancestry and phenotype to proceed quickly, and that it occurs faster if the phenotype is driven by fewer loci. Positive assortative mating attenuates the process of dissociation relative to a scenario in which mating is random with respect to genetic admixture and with respect to phenotype.

conclusionsThe mechanistic framework suggests that in an admixed population, a trait that initially differed between source populations might serve as a reliable proxy for ancestry for only a short time, especially if the trait is determined by few loci. It follows that a social categorization based on such a trait is increasingly uninformative about genetic ancestry and about other traits that differed between source populations at the onset of admixture.

Indexed as

Genetics, PopulationAnthropology, PhysicalFemaleGene FlowGene FrequencyGenome, HumanGenotypeHumansMalePhenotypeSkin Pigmentationadmixtureassortative matingmechanistic modelpopulation genetics

Identifiers

PMID33772750
PMCPMC8202736

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.