Evidence map›Paper›PMID 33771926›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

CD4 receptor diversity represents an ancient protection mechanism against primate lentiviruses.

Ronnie M Russell, Frederic Bibollet-Ruche, Weimin Liu, Scott Sherrill-Mix, Yingying Li, Jesse Connell, Dorothy E Loy, Stephanie Trimboli, Andrew G Smith, Alexa N Avitto and 23 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Host ZAP activity correlates with the levels of CpG suppression in primate lentiviruses.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. A balancing act between primate lentiviruses and their receptor.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 12 institutions in 4 countries.

Ronnie M RussellDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Frederic Bibollet-RucheDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Weimin LiuDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-2903-2834
Scott Sherrill-MixDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-8955-8072
Yingying LiDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-0237-6824
Jesse ConnellDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-9393-3074
Dorothy E LoyDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-3207-0893
Stephanie TrimboliDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Andrew G SmithDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Alexa N AvittoDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-1971-4479
Marcos V P GondimDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Lindsey J PlenderleithInstitute of Evolutionary Biology, University of Edinburgh, EH9 3FL Edinburgh, United Kingdom.ORCID 0000-0003-1941-2876
Katherine S WetzelDepartment of Microbiology, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-5364-5705
Ronald G CollmanDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Ahidjo AyoubaRecherche Translationnelle Appliquée au VIH et aux Maladies Infectieuses, Institut de Recherche pour le Développement, University of Montpellier, INSERM, 34090 Montpellier, France.ORCID 0000-0002-5081-1632
Amandine EstebanRecherche Translationnelle Appliquée au VIH et aux Maladies Infectieuses, Institut de Recherche pour le Développement, University of Montpellier, INSERM, 34090 Montpellier, France.
Martine PeetersRecherche Translationnelle Appliquée au VIH et aux Maladies Infectieuses, Institut de Recherche pour le Développement, University of Montpellier, INSERM, 34090 Montpellier, France.ORCID 0000-0001-6738-8730
William J KohlerDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0002-4598-6497
Richard A MillerDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0001-9266-9649
Sandrine François-SouquiereHepatology and Gastroenterology Unit, University Hospital of Limoges, 87042 Limoges, France.
William M SwitzerLaboratory Branch, Division of HIV/AIDS Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30329.
Vanessa M HirschLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD 20892.ORCID 0000-0002-1228-7761
Preston A MarxDepartment of Tropical Medicine, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA 70118.
Alex K PielDepartment of Anthropology, University College London, WC1H 0BW London, United Kingdom.ORCID 0000-0002-4674-537X
Fiona A StewartDepartment of Anthropology, University College London, WC1H 0BW London, United Kingdom.
Alexander V GeorgievDepartment of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138.ORCID 0000-0001-5622-3826
Volker SommerDepartment of Anthropology, University College London, WC1H 0BW London, United Kingdom.
Paco BertolaniLeverhulme Centre for Human Evolutionary Studies, University of Cambridge, CB2 1QH Cambridge, United Kingdom.ORCID 0000-0001-9423-6767
John A HartLukuru Wildlife Research Foundation, Tshuapa-Lomami-Lualaba Project, BP 2012, Kinshasa, Democratic Republic of the Congo.
Terese B HartLukuru Wildlife Research Foundation, Tshuapa-Lomami-Lualaba Project, BP 2012, Kinshasa, Democratic Republic of the Congo.
George M ShawDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Paul M SharpInstitute of Evolutionary Biology, University of Edinburgh, EH9 3FL Edinburgh, United Kingdom.
Beatrice H HahnDepartment of Medicine, University of Pennsylvania, Philadelphia, PA 19104; bhahn@pennmedicine.upenn.edu.ORCID 0000-0002-9400-9887
University of Pennsylvania · USInserm · FRUniversity College London · GBCentre for Immunity, Infection and Evolution · GBLukuru Foundation · CDUniversity of Michigan · USCenters for Disease Control and Prevention · USHarvard University · USNational Institute of Allergy and Infectious Diseases · USTulane University · USUniversité de Limoges · FRUniversity of Cambridge · GB

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI Thomas Girke, NICHOLAS Joseph SCHORK · 2004 to 2026
$102.6M
ZCM:A NOVEL BROAD-SPECTRUM MICROBICIDE FOR SEXUALLY TRANSMITTED INFECTIONSP51RR000164 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI VEAZEY, RONALD S. · 1985 to 2011
$100.1M
Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DAVID S METZGER · 1999 to 2026
$78.6M
Virus and Antibody Gene Sequencing CoreP01AI131251 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Kevin Wiehe · 2017 to 2026
$40.7M
Research Education CoreP30AG024824 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Neil Alexander · 2004 to 2026
$29.2M
Pathogenesis Studies Of Simian Immunodeficiency Virus Infection Of MonkeysZIAAI000370 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HIRSCH, VANESSA M. · 2009 to 2022
$16.2M
TRAINING IN HIV PATHOGENESIST32AI007632 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Frederic D Bushman, James L. Riley · 2000 to 2026
$10.6M
Optimizing glycan shield coverage, germline B cell receptor binding and epitope diversity of V2-apex targeted HIV-1 Env immunogensR37AI150590 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Beatrice H Hahn · 2019 to 2026
$6.9M
HIV-1 Q23.17 Env: Engineering a novel immunogen to elicit broadly neutralizing antibodiesR01AI165080 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI GEORGE M SHAW · 2021 to 2026
$6.6M
Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Studies of the precursor of the human AIDS virus in its natural chimpanzee hostR01AI120810 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2016 to 2020
$3.4M
NCRR NIH HHS P51 RR000164NIAID NIH HHS P01 AI131251NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI050529NIAID NIH HHS R01 AI120810NIAID NIH HHS R01 AI131331NIAID NIH HHS R01 AI160607NIAID NIH HHS R01 AI165080NIAID NIH HHS R33 AI133696NIAID NIH HHS R37 AI150590NIAID NIH HHS T32 AI007632NIA NIH HHS P30 AG024824NIA NIH HHS U19 AG023122NIA NIH HHS UH3 AG064706NIH HHS P51 OD011104
6 · The paper itself

Abstract

Infection with human and simian immunodeficiency viruses (HIV/SIV) requires binding of the viral envelope glycoprotein (Env) to the host protein CD4 on the surface of immune cells. Although invariant in humans, the Env binding domain of the chimpanzee CD4 is highly polymorphic, with nine coding variants circulating in wild populations. Here, we show that within-species CD4 diversity is not unique to chimpanzees but found in many African primate species. Characterizing the outermost (D1) domain of the CD4 protein in over 500 monkeys and apes, we found polymorphic residues in 24 of 29 primate species, with as many as 11 different coding variants identified within a single species. D1 domain amino acid replacements affected SIV Env-mediated cell entry in a single-round infection assay, restricting infection in a strain- and allele-specific fashion. Several identical CD4 polymorphisms, including the addition of

Indexed as

Genetic VariationHIVSimian Immunodeficiency VirusAcquired Immunodeficiency SyndromeAllelesAnimalsCatarrhiniCD4 AntigensEvolution, MolecularGene Products, envHumansProtein BindingProtein DomainsSimian Acquired Immunodeficiency SyndromeCD4 AntigensGene Products, envbalancing selectionCD4parallel evolutionprimate lentivirusestrans-specific polymorphism

Identifiers

PMID33771926
PMCPMC8020793
OpenAlexW3138811272

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.