Evidence map›Paper›PMID 33770376›Full record

ArticleJournal of applied genetics2021

Transcriptome sequencing of wild soybean revealed gene expression dynamics under low nitrogen stress.

Qi Sun, Haoran Lu, Qing Zhang, Di Wang, Jun Chen, Jialei Xiao, Xiaodong Ding, Qiang Li

Abstract read
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In one paragraph

Article in Journal of applied genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Improvement of heat stress tolerance in soybean (Frontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Qi Sun *Key Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China.
Haoran Lu *Key Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China.
Qing ZhangKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China.
Di WangKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China.
Jun ChenKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China.
Jialei XiaoKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China.
Xiaodong DingKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China. xiaodong.ding@neau.edu.cn.
Qiang LiKey Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China. lstrong@neau.edu.cn.ORCID http://orcid.org/0000-0002-4930-3075
Northeast Agricultural University · CN

Funding

National Natural Science Foundation of China 31670272Natural Science Foundation of Heilongjiang Province C2017014
6 · The paper itself

Abstract

Nitrogen is one of the essential elements for plant growth. Wild soybeans (Glycine soja) have strong abilities to survive in harsh and barren environments, and hence become ideal plant model for studying plant adaptability to low nitrogen (LN) conditions. In this study, we analyzed and compared the transcriptomes of wild soybean subjected to LN treatments. We totally identified 1095 (681 up and 414 down) and 5490 (2998 up and 2492 down) differentially expressed genes (DEGs) in the aerial parts (leaf and stem, LS) and roots, respectively. Gene ontology classification analysis revealed that the categories related to LN stress (including oxidation reduction, transcriptional regulation, membrane, and protein phosphorylation) were highly enriched among DEGs. In addition, a total of 784 transcription factor (TF) and 84 transporter protein (TP) genes were determined in LS DEGs, of which some TF genes (NAC1, NAC35, ZFP1, CIM1, and WRKY25) and TP genes like NRT2.5 (nitrate transporter) and ABCC12 (ABC transporter) were widely upregulated under LN stress. Nevertheless, a total of 3859 TF and 370 TP genes were identified in root DEGs, of which some TF genes (NAC6, NAC14, MYB29, MYB92, bZIP62, bZIP72, WRKY60, WRKY58) and TP genes like NRT2.4 and HAK5 (potassium transporter) were upregulated under LN stress. These findings suggest that the identified DEGs may play vital roles in plant responses to LN stress, providing important genetic resources for further functional dissection of plant molecular mechanisms to LN stress.

Indexed as

Gene Expression Regulation, PlantGlycine maxNitrogenTranscriptomeGene Expression ProfilingGenes, PlantPlant LeavesPlant RootsPlant StemsStress, PhysiologicalNitrogenDifferentially expressed genesGlycine soja,Low nitrogen stress,Transcriptome,

Identifiers

PMID33770376
OpenAlexW3138060987

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.