Evidence map›Paper›PMID 33770073›Full record

ArticlePLoS biology2021

Dynamics of the cell fate specifications during female gametophyte development in Arabidopsis.

Daichi Susaki, Takamasa Suzuki, Daisuke Maruyama, Minako Ueda, Tetsuya Higashiyama, Daisuke Kurihara

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 56 citations in OpenAlex.

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  15. Identification of the passion fruit (Frontiers in plant science · 2023
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  16. Discovery of aFrontiers in plant science · 2023
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  17. BABY BOOM regulates early embryo and endosperm development.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  18. Quantification of Species-Preferential Micropylar Chemoattraction inInternational journal of molecular sciences · 2022
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  19. Advances in Two-Photon Imaging in Plants.Plant & cell physiology · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Daichi SusakiKihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.ORCID 0000-0002-9465-9222
Takamasa SuzukiDepartment of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University, Kasugai, Japan.ORCID 0000-0002-1977-0510
Daisuke MaruyamaKihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.
Minako UedaInstitute of Transformative Bio-Molecules (ITbM), Nagoya University, Nagoya, Japan.
Tetsuya HigashiyamaInstitute of Transformative Bio-Molecules (ITbM), Nagoya University, Nagoya, Japan.ORCID 0000-0002-7346-360X
Daisuke KuriharaInstitute of Transformative Bio-Molecules (ITbM), Nagoya University, Nagoya, Japan.ORCID 0000-0003-2703-0405
Nagoya University · JPKihara Institute for Biological Research · JPChubu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The female gametophytes of angiosperms contain cells with distinct functions, such as those that enable reproduction via pollen tube attraction and fertilization. Although the female gametophyte undergoes unique developmental processes, such as several rounds of nuclear division without cell plate formation and final cellularization, it remains unknown when and how the cell fate is determined during development. Here, we visualized the living dynamics of female gametophyte development and performed transcriptome analysis of individual cell types to assess the cell fate specifications in Arabidopsis thaliana. We recorded time lapses of the nuclear dynamics and cell plate formation from the 1-nucleate stage to the 7-cell stage after cellularization using an in vitro ovule culture system. The movies showed that the nuclear division occurred along the micropylar-chalazal (distal-proximal) axis. During cellularization, the polar nuclei migrated while associating with the forming edge of the cell plate, and then, migrated toward each other to fuse linearly. We also tracked the gene expression dynamics and identified that the expression of MYB98pro::GFP-MYB98, a synergid-specific marker, was initiated just after cellularization in the synergid, egg, and central cells and was then restricted to the synergid cells. This indicated that cell fates are determined immediately after cellularization. Transcriptome analysis of the female gametophyte cells of the wild-type and myb98 mutant revealed that the myb98 synergid cells had egg cell-like gene expression profiles. Although in myb98, egg cell-specific gene expression was properly initiated in the egg cells only after cellularization, but subsequently expressed ectopically in one of the 2 synergid cells. These results, together with the various initiation timings of the egg cell-specific genes, suggest complex regulation of the individual gametophyte cells, such as cellularization-triggered fate initiation, MYB98-dependent fate maintenance, cell morphogenesis, and organelle positioning. Our system of live-cell imaging and cell type-specific gene expression analysis provides insights into the dynamics and mechanisms of cell fate specifications in the development of female gametophytes in plants.

Indexed as

ArabidopsisArabidopsis ProteinsCell DifferentiationCell NucleusCytoplasmGene ExpressionGene Expression ProfilingGene Expression Regulation, PlantMagnoliopsidaMorphogenesisOvulePollen TubePromoter Regions, GeneticTranscription FactorsTranscriptomeArabidopsis ProteinsTranscription Factors

Identifiers

PMID33770073
PMCPMC7997040
OpenAlexW3138087643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.