Evidence map›Paper›PMID 33768973›Full record

ArticlePhytopathology research2020

Home-made enzymatic premix and Illumina sequencing allow for one-step Gibson assembly and verification of virus infectious clones.

Mingmin Zhao, Beatriz García, Araiz Gallo, Ioannis E Tzanetakis, Carmen Simón-Mateo, Juan Antonio García, Fabio Pasin

Abstract read
In one paragraph

Article in Phytopathology research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mingmin ZhaoCentro Nacional de Biotecnología (CNB-CSIC), 28049 Madrid, Spain.
Beatriz GarcíaCentro Nacional de Biotecnología (CNB-CSIC), 28049 Madrid, Spain.
Araiz GalloCentro Nacional de Biotecnología (CNB-CSIC), 28049 Madrid, Spain.
Ioannis E TzanetakisDepartment of Entomology and Plant Pathology, Division of Agriculture, University of Arkansas System, 72701 Fayetteville, USA.
Carmen Simón-MateoCentro Nacional de Biotecnología (CNB-CSIC), 28049 Madrid, Spain.
Juan Antonio GarcíaCentro Nacional de Biotecnología (CNB-CSIC), 28049 Madrid, Spain.
Fabio PasinCentro Nacional de Biotecnología (CNB-CSIC), 28049 Madrid, Spain.ORCID 0000-0002-9620-4301

Funding

Democratization of Data Analysis in Life Sciences Through GalaxyU41HG006620 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI NEKRUTENKO, ANTON, SCHATZ, MICHAEL · 2012 to 2020
$14.4M
Democratization of Data Analysis in Life Sciences Through GalaxyU24HG006620 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI Daniel James Blankenberg, Jeremy Goecks · 2021 to 2026
$9.8M
NHGRI NIH HHS U24 HG006620NHGRI NIH HHS U41 HG006620
6 · The paper itself

Abstract

An unprecedented number of viruses have been discovered by leveraging advances in high-throughput sequencing. Infectious clone technology is a universal approach that facilitates the study of biology and role in disease of viruses. In recent years homology-based cloning methods such as Gibson assembly have been used to generate virus infectious clones. We detail herein the preparation of home-made cloning materials for Gibson assembly. The home-made materials were used in one-step generation of the infectious cDNA clone of a plant RNA virus into a T-DNA binary vector. The clone was verified by a single Illumina reaction and a de novo read assembly approach that required no primer walking, custom primers or reference sequences. Clone infectivity was finally confirmed by

Indexed as

Agro-infectionGibson assemblyHome-made cloning reagentsIllumina sequencingPotyvirusTobacco vein mottling virusVirus infectious clone

Identifiers

PMID33768973
PMCPMC7990137

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.