Evidence map›Paper›PMID 33767857›Full record

ArticleMolecular and clinical oncology2021

Methylation and molecular profiles of ependymoma: Influence of patient age and tumor anatomic location.

Hwa Jin Cho, Ha Young Park, Kwangsoo Kim, Heejoon Chae, Sun Ha Paek, Seung-Ki Kim, Chul-Kee Park, Seung-Hong Choi, Sung-Hye Park

Open access · diamondAbstract read
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Article in Molecular and clinical oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hwa Jin ChoDepartment of Pathology, Inje University Busan Paik Hospital, Busan 47392, Republic of Korea.
Ha Young ParkDepartment of Pathology, Inje University Busan Paik Hospital, Busan 47392, Republic of Korea.
Kwangsoo KimDivision of Clinical Bioinformatics, Biomedical Research Institute, Seoul National University Hospital, Seoul 03080, Republic of Korea.
Heejoon ChaeDivision of Computer Science, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Sun Ha PaekDepartment of Neurosurgery, Seoul National University Hospital, Seoul National University College of Medicine, Seoul 03080, Republic of Korea.
Seung-Ki KimDepartment of Neurosurgery, Seoul National University Hospital, Seoul National University College of Medicine, Seoul 03080, Republic of Korea.
Chul-Kee ParkDepartment of Neurosurgery, Seoul National University Hospital, Seoul National University College of Medicine, Seoul 03080, Republic of Korea.
Seung-Hong ChoiDepartment of Radiology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul 03080, Republic of Korea.
Sung-Hye ParkDepartment of Pathology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul 03080, Republic of Korea.
Seoul National University Hospital · KRInje University Busan Paik Hospital · KRSookmyung Women's University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ependymomas are tumors of the central nervous system that can occur in patients of all ages. Guidelines from the World Health Organization (WHO) for the grading of ependymomas consider patient age, tumor resection range, tumor location and histopathological grade. However, recent studies have suggested that a greater focus on both tumor location and patient age in terms of transcriptomic, genetic, and epigenetic analyses may provide a more accurate assessment of clinical prognosis than the grading system proposed by WHO guidelines. The current study identified the differences and similarities in ependymoma characteristics using three different molecular analyses and methylation arrays. Primary intracranial ependymoma tissues were obtained from 13 Korean patients (9 adults and 4 children), after which whole-exome sequencing (WES), ion-proton comprehensive cancer panel (CCP) analysis, RNA sequencing, and Infinium HumanMethylation450 BeadChip array analysis was performed. Somatic mutations, copy number variations, and fusion genes were identified. It was observed that the methylation status and differentially expressed genes were significantly different according to tumor location and patient age. Several novel gene fusions and somatic mutations were identified, including a

Indexed as

classificationDNA methylationependymomamolecular analysisnext generation sequencing

Identifiers

PMID33767857
PMCPMC7976387
OpenAlexW3135761811

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.